New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6062179	43 (1.360)	4 (0.130)	4/242	NT	9.5%	coding (581/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	= 6062220	34 (1.100)					coding (540/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

TCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAA  >  NC_002947/6062078‑6062354                                                                                                                                               |                                                                                                                                       tCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGa                                                                                                                                 <  1:652881/150‑1 (MQ=255)            tCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                                                <  1:818852/140‑1 (MQ=255)            tCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                                                >  2:818852/1‑140 (MQ=255)               gACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGgc                                                                                                                   <  1:810767/150‑1 (MQ=255)                             cAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGAc                                                                                                     >  1:454371/1‑150 (MQ=255)                             cAGGCCTTGAGTCACCTGCTGAAGACGGGTCAACACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGt                                                                                                                            >  1:458545/1‑127 (MQ=255)                             cAGGCCTTGAGTAACCTGCTGAAGACGGGTCAACACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGt                                                                                                                            <  2:458545/127‑1 (MQ=255)                                 ccTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGAGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTg                                                                                                 >  1:401736/1‑150 (MQ=255)                                   ttGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGaa                                                                                               <  1:377727/150‑1 (MQ=255)                                   ttGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGaa                                                                                               <  2:214010/150‑1 (MQ=255)                                        tCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                                                <  2:756641/112‑1 (MQ=255)                                        tCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                                                >  1:756641/1‑112 (MQ=255)                                        tCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAgccgc                                                                                          >  1:337479/1‑150 (MQ=255)                                           ccTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCa                                                                                       <  2:602403/150‑1 (MQ=255)                                             tgctgAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                                                    >  2:786011/1‑103 (MQ=255)                                             tgctgAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                                                    <  1:786011/103‑1 (MQ=255)                                                         gTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGttt                                                                         <  2:410441/150‑1 (MQ=255)                                                            aGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCg                                                                      >  1:495703/1‑150 (MQ=255)                                                              cACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                                                >  2:762939/1‑90 (MQ=255)                                                              cACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                                                <  1:762939/90‑1 (MQ=255)                                                               aCCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGa                                                                                                                                 <  2:70433/88‑1 (MQ=255)                                                               aCCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGa                                                                                                                                 >  1:70433/1‑88 (MQ=255)                                                                ccGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTc                                                                                                                          >  2:701113/1‑94 (MQ=255)                                                                ccGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTc                                                                                                                          <  1:701113/94‑1 (MQ=255)                                                                    ccccAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCa                                                              <  1:697779/150‑1 (MQ=255)                                                                     cccAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTc                                                                                  >  2:382812/1‑129 (MQ=255)                                                                     cccAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTc                                                                                  <  1:382812/129‑1 (MQ=255)                                                                      ccAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGc                                                            >  1:171785/1‑150 (MQ=255)                                                                              aaGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAgg                                                    <  2:454371/150‑1 (MQ=255)                                                                                        ccAGGCCCTCCAGCCCACCCTTCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGa                                          >  1:131771/1‑150 (MQ=255)                                                                                          aGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGACGCCCGGACTACTGCCGGTTGGGAATGCGCATCCGATCAGGCCGGCACCGAgg                                        >  2:310015/1‑150 (MQ=255)                                                                                            gCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGAt                                      <  2:171785/150‑1 (MQ=255)                                                                                               cTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAg                                   >  1:556634/1‑150 (MQ=255)                                                                                                tCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaatgccttgaggcgcacttttcggacggcagcgtga                                  <  2:140595‑M2/150‑103 (MQ=255)                                                                                                    gCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgatcgc                              <  2:444763‑M2/150‑107 (MQ=255)                                                                                                     cccACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTGACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACg                             >  2:554042/1‑150 (MQ=255)                                                                                                     cccACCCTGCACAGCCACCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACTGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACg                             >  2:745523/1‑150 (MQ=255)                                                                                                      ccACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgatcgcct                            >  1:140595‑M2/1‑42 (MQ=255)                                                                                                        aCCCTTCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACgctg                          <  2:131771/150‑1 (MQ=255)                                                                                                          ccTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGTCACCGAGGATCa                                    >  2:415516/1‑138 (MQ=255)                                                                                                          ccTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGTCACCGAGGATCa                                    <  1:415516/138‑1 (MQ=255)                                                                                                           cTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTGggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtctccagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgagcgcctgcgac                       <  1:557471‑M2/150‑114 (MQ=255)                                                                                                               ccggccgctGCGGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGCTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCa                   >  2:564508/4‑150 (MQ=255)                                                                                                                 aGCCGCCGCAGCGGCCGGTGGCAGCAGGGTCGGCATGATCTGTTCACACGGCTCAACAACGTCCACCTTCAACTCGTCCAGGCGCATGTCGTTTGCGAATTCGTAGACGATCAGGCCGGCACCCAGGATCAGTACACGCTGCTTGCCAgc                 <  2:165411/150‑1 (MQ=255)                                                                                                                      ccgcAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCAAGGCTCATGGCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGcggcgg            >  2:708871/1‑150 (MQ=255)                                                                                                                           gCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGgcagca       <  2:337479/150‑1 (MQ=255)                                                                                                                                cGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGaa  <  1:608415/150‑1 (MQ=255)                                                                                                                                       agcagGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGaa  >  2:627862/1‑143 (MQ=255)                                                                                                                                       agcagGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGaa  <  1:627862/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                       TCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAA  >  NC_002947/6062078‑6062354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.