New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6062179	43 (1.360)	4 (0.130)	4/242	NT	9.5%	coding (581/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	= 6062220	34 (1.100)					coding (540/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

CGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGC  >  NC_002947/6062035‑6062328                                                                                                                                                  |                                                                                                                                                      cGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCAccc                                                                                                                                                  <  1:85269/150‑1 (MQ=255)                  ggCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGc                                                                                                                                 <  1:327154/150‑1 (MQ=255)                             ccaGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGc                                                                                                                                 <  2:292388/139‑1 (MQ=255)                             ccaGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTgca                                                                                                                      >  1:614534/1‑150 (MQ=255)                             ccaGGTAGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGc                                                                                                                                 >  1:292388/1‑139 (MQ=255)                             ccaGGGCGCAGGCGATCACGCTGCCGCCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCGCA‑CTGCCGGGGGTCGCCACTATCCTGCCAGCCCACGCTGCACAGCGGCCGCAGCCGCCGGGTgca                                                                                                                      <  2:670110/150‑1 (MQ=255)                              caGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTgcag                                                                                                                     >  2:810767/1‑150 (MQ=255)                              caGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTgcag                                                                                                                     >  1:165411/1‑150 (MQ=255)                              caGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTgcag                                                                                                                     >  1:214010/1‑150 (MQ=255)                                ggTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTgcagca                                                                                                                   <  2:614534/150‑1 (MQ=255)                                 gTCGCAGGCGCTCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGGAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCcaccctgctgcacccggccgctgcggcggctgtgcag                                                                                                                  <  1:557471‑M1/150‑38 (MQ=255)                                  tcacAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAgg                                                                                                                 <  2:675844/147‑1 (MQ=255)                                      aGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCgaccctgctgcacccggccgctgcggcggctgtgcagggtgg                                                                                                             >  1:140595‑M1/1‑108 (MQ=255)                                        gCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCgaccctgctgcacccggccgctgcggcggctgtgcagggtgggc                                                                                                           <  2:444763‑M1/150‑45 (MQ=255)                                            tCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGa                                                                                                       <  1:652881/150‑1 (MQ=255)                                            tCACGCTGCCGTCCGAAAAGTGCGCCTCAAGGCATTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCgaccctgctgcacccggccgctgcggcggctgtgcagggtgggctgga                                                                                                       <  2:140595‑M1/150‑49 (MQ=255)                                                       tCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                      >  2:818852/1‑140 (MQ=255)                                                       tCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                      <  1:818852/140‑1 (MQ=255)                                                          gACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGgc                                                                                         <  1:810767/150‑1 (MQ=255)                                                                        cAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGAc                                                                           >  1:454371/1‑150 (MQ=255)                                                                        cAGGCCTTGAGTCACCTGCTGAAGACGGGTCAACACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGt                                                                                                  >  1:458545/1‑127 (MQ=255)                                                                        cAGGCCTTGAGTAACCTGCTGAAGACGGGTCAACACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGt                                                                                                  <  2:458545/127‑1 (MQ=255)                                                                            ccTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGAGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTg                                                                       >  1:401736/1‑150 (MQ=255)                                                                              ttGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGaa                                                                     <  1:377727/150‑1 (MQ=255)                                                                              ttGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGaa                                                                     <  2:214010/150‑1 (MQ=255)                                                                                   tCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                      >  1:756641/1‑112 (MQ=255)                                                                                   tCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                      <  2:756641/112‑1 (MQ=255)                                                                                   tCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAgccgc                                                                >  1:337479/1‑150 (MQ=255)                                                                                      ccTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCa                                                             <  2:602403/150‑1 (MQ=255)                                                                                        tgctgAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                          >  2:786011/1‑103 (MQ=255)                                                                                        tgctgAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                          <  1:786011/103‑1 (MQ=255)                                                                                                    gTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGttt                                               <  2:410441/150‑1 (MQ=255)                                                                                                       aGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCg                                            >  1:495703/1‑150 (MQ=255)                                                                                                         cACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                      >  2:762939/1‑90 (MQ=255)                                                                                                         cACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                      <  1:762939/90‑1 (MQ=255)                                                                                                          aCCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGa                                                                                                       <  2:70433/88‑1 (MQ=255)                                                                                                          aCCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGa                                                                                                       >  1:70433/1‑88 (MQ=255)                                                                                                           ccGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTc                                                                                                >  2:701113/1‑94 (MQ=255)                                                                                                           ccGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTc                                                                                                <  1:701113/94‑1 (MQ=255)                                                                                                               ccccAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCa                                    <  1:697779/150‑1 (MQ=255)                                                                                                                cccAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTc                                                        <  1:382812/129‑1 (MQ=255)                                                                                                                cccAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTc                                                        >  2:382812/1‑129 (MQ=255)                                                                                                                 ccAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGc                                  >  1:171785/1‑150 (MQ=255)                                                                                                                         aaGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAgg                          <  2:454371/150‑1 (MQ=255)                                                                                                                                   c‑cAGGCCCTCCAGCCCACCCTTCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGa                >  1:131771/1‑150 (MQ=255)                                                                                                                                      aGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGACGCCCGGACTACTGCCGGTTGGGAATGCGCATCCGATCAGGCCGGCACCGAgg              >  2:310015/1‑150 (MQ=255)                                                                                                                                        gCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGAt            <  2:171785/150‑1 (MQ=255)                                                                                                                                           cTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAg         >  1:556634/1‑150 (MQ=255)                                                                                                                                            tCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaatgccttgaggcgcacttttcggacggcagcgtga        <  2:140595‑M2/150‑103 (MQ=255)                                                                                                                                                gCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgatcgc    <  2:444763‑M2/150‑107 (MQ=255)                                                                                                                                                 cccACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTGACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACg   >  2:554042/1‑150 (MQ=255)                                                                                                                                                 cccACCCTGCACAGCCACCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACTGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACg   >  2:745523/1‑150 (MQ=255)                                                                                                                                                  ccACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgatcgcct  >  1:140595‑M2/1‑42 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACC‑CAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGC  >  NC_002947/6062035‑6062328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.