New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 25750	22 (0.690)	6 (0.210)	6/228	NT	22.5%	intergenic (+180/‑131)	PP_0020/PP_0021	hypothetical protein/hypothetical protein
	?	NC_002947	= 25768	21 (0.720)					intergenic (+198/‑113)	PP_0020/PP_0021	hypothetical protein/hypothetical protein

TTTGACCTTAGCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTAT  >  NC_002947/25602‑25892                                                                                                                                                     |                                                                                                                                               tttGACCTTAGCTGACAGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGAACTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAg                                                                                                                                               >  1:5930/1‑150 (MQ=255)             tGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCa                                                                                                                                   >  1:453999/1‑150 (MQ=255)                         ctACAAACCAAGTGACTTCCGCCGGCGCCGGTGTCACTGCCCCACCAAGAATAGCCCCCACGCCACGGCCAGGTCGCACACCTGTGCTTCGCACCATGGGGTTAGTTGGTTCTAGGGCCCGCCCACGTCGATCAGGCATGCTTTaggcgg                                                                                                                       <  2:519185/150‑1 (MQ=255)                               aCCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAaagcatgcctgatcgacctgggcgg                                                                                                                       <  2:72255‑M1/144‑26 (MQ=255)                               aCCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAaagcatgcctgatcgacctgggcgg                                                                                                                       >  1:72255‑M1/1‑119 (MQ=255)                                  aaTTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAAc                                                                                                              <  2:744751/150‑1 (MQ=255)                                  aaTTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAAc                                                                                                              <  2:280561/150‑1 (MQ=255)                                               cGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGacca                                                                                                 >  1:146621/1‑150 (MQ=255)                                               cGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGacca                                                                                                 <  2:772541/150‑1 (MQ=255)                                                                   cTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGcc                                                                             >  2:696021/1‑150 (MQ=255)                                                                      cAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTAc                                                                          >  1:238807/1‑150 (MQ=255)                                                                       aaGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTAct                                                                         >  2:19739/1‑150 (MQ=255)                                                                       aaGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTAct                                                                         >  1:748398/1‑150 (MQ=255)                                                                            tAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGATCAGTTAGGCCTACtgctgc                                                                    <  1:19739/150‑1 (MQ=255)                                                                                  ccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAaagcatgcctgatcgacctgggcgggccctagaaacaactaaccc                                                                                                   >  2:711888‑M1/1‑68 (MQ=255)                                                                                  ccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAaagcatgcctgatcgacctgggcgggccctagaaacaactaaccc                                                                                                   <  1:711888‑M1/113‑46 (MQ=255)                                                                                  ccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcg                                                                                                                        >  1:302808‑M2/1‑86 (MQ=255)                                                                                  ccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcg                                                                                                                        <  2:302808‑M2/92‑7 (MQ=255)                                                                                      gCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCctcgc                                                          <  2:146621/150‑1 (MQ=255)                                                                                      gCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCACGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCctcgc                                                          >  2:362548/1‑150 (MQ=255)                                                                                                   cccAGACCTGTACTGCGCACCAGGGGGGTAGTTGTTTCTAAGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCa                                             >  2:644928/1‑150 (MQ=255)                                                                                                   cccAGACATGTACTGCGCACCACGGGGTTAGTTGTTTCTAGGGCCCGTCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCACACCAGTGGGTGACCATCAAAAGTGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCa                                             <  2:5930/150‑1 (MQ=255)                                                                                                    ccAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGc                                                                              <  2:521794/116‑1 (MQ=255)                                                                                                    ccAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGc                                                                              >  1:521794/1‑116 (MQ=255)                                                                                                         ccTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGAcc                                       >  2:841985/1‑150 (MQ=255)                                                                                                                       cAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACgg                         <  1:841985/150‑1 (MQ=255)                                                                                                                        aGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaacccc                                                                                                  <  2:26189‑M2/76‑29 (MQ=255)                                                                                                                        aGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaacccc                                                                                                  >  1:26189‑M2/1‑48 (MQ=255)                                                                                                                          ggggTTAGTTGTTTCTAGGGCCCGCCCAaagcatgcctgatcgacctgggcgggccctagaaacaactaaccccct                                                                                                <  2:26189‑M1/76‑49 (MQ=255)                                                                                                                          ggggTTAGTTGTTTCTAGGGCCCGCCCAaagcatgcctgatcgacctgggcgggccctagaaacaactaaccccct                                                                                                >  1:26189‑M1/1‑28 (MQ=255)                                                                                                                           gggTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgg                                                          <  1:711888‑M2/113‑69 (MQ=255)                                                                                                                           gggTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgg                                                          >  2:711888‑M2/1‑45 (MQ=255)                                                                                                                             gTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAg                   <  2:453999/150‑1 (MQ=255)                                                                                                                                   tgttTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAga             <  1:696021/150‑1 (MQ=255)                                                                                                                                              cccgcccAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCtat  >  2:491559/1‑150 (MQ=255)                                                                                                                                               ccgcccAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgggggctattcttggagcgacagtgacaccggctccggagaaaatcaattggt       >  1:72255‑M2/1‑25 (MQ=255)                                                                                                                                               ccgcccAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgggggctattcttggagcgacagtgacaccggctccggagaaaatcaattggt       <  2:72255‑M2/144‑120 (MQ=255)                                                                                                                                                cgcccAaagcatgcctgatcgacctgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgg                                                          <  2:302808‑M1/92‑87 (MQ=255)                                                                                                                                                cgcccAaagcatgcctgatcgacctgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgg                                                          >  1:302808‑M1/1‑6 (MQ=255)                                                                                                                                                     |                                                                                                                                               TTTGACCTTAGCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTAT  >  NC_002947/25602‑25892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.