New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 25750	22 (0.690)	6 (0.210)	6/228	NT	22.5%	intergenic (+180/‑131)	PP_0020/PP_0021	hypothetical protein/hypothetical protein
	?	NC_002947	= 25768	21 (0.720)					intergenic (+198/‑113)	PP_0020/PP_0021	hypothetical protein/hypothetical protein

CTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAA  >  NC_002947/25626‑25907                                                                                                                                               |                                                                                                                                            ctACAAACCAAGTGACTTCCGCCGGCGCCGGTGTCACTGCCCCACCAAGAATAGCCCCCACGCCACGGCCAGGTCGCACACCTGTGCTTCGCACCATGGGGTTAGTTGGTTCTAGGGCCCGCCCACGTCGATCAGGCATGCTTTaggcgg                                                                                                                                      <  2:519185/150‑1 (MQ=255)          aaTTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAAc                                                                                                                             <  2:744751/150‑1 (MQ=255)          aaTTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAAc                                                                                                                             <  2:280561/150‑1 (MQ=255)                       cGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGacca                                                                                                                >  1:146621/1‑150 (MQ=255)                       cGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGacca                                                                                                                <  2:772541/150‑1 (MQ=255)                                           cTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGcc                                                                                            >  2:696021/1‑150 (MQ=255)                                              cAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTAc                                                                                         >  1:238807/1‑150 (MQ=255)                                               aaGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTAct                                                                                        >  2:19739/1‑150 (MQ=255)                                               aaGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTAct                                                                                        >  1:748398/1‑150 (MQ=255)                                                    tAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGATCAGTTAGGCCTACtgctgc                                                                                   <  1:19739/150‑1 (MQ=255)                                                          ccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcg                                                                                                                                       >  1:302808‑M2/1‑86 (MQ=255)                                                          ccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcg                                                                                                                                       <  2:302808‑M2/92‑7 (MQ=255)                                                              gCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCctcgc                                                                         <  2:146621/150‑1 (MQ=255)                                                              gCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCACGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCctcgc                                                                         >  2:362548/1‑150 (MQ=255)                                                                           cccAGACCTGTACTGCGCACCAGGGGGGTAGTTGTTTCTAAGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCa                                                            >  2:644928/1‑150 (MQ=255)                                                                           cccAGACATGTACTGCGCACCACGGGGTTAGTTGTTTCTAGGGCCCGTCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCACACCAGTGGGTGACCATCAAAAGTGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCa                                                            <  2:5930/150‑1 (MQ=255)                                                                            ccAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGc                                                                                             <  2:521794/116‑1 (MQ=255)                                                                            ccAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGc                                                                                             >  1:521794/1‑116 (MQ=255)                                                                                 ccTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGAcc                                                      >  2:841985/1‑150 (MQ=255)                                                                                               cAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACgg                                        <  1:841985/150‑1 (MQ=255)                                                                                                aGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaacccc                                                                                                                 <  2:26189‑M2/76‑29 (MQ=255)                                                                                                aGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaacccc                                                                                                                 >  1:26189‑M2/1‑48 (MQ=255)                                                                                                   gggTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgg                                                                         <  1:711888‑M2/113‑69 (MQ=255)                                                                                                   gggTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgg                                                                         >  2:711888‑M2/1‑45 (MQ=255)                                                                                                     gTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAg                                  <  2:453999/150‑1 (MQ=255)                                                                                                           tgttTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAga                            <  1:696021/150‑1 (MQ=255)                                                                                                                      cccgcccAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCtat                 >  2:491559/1‑150 (MQ=255)                                                                                                                       ccgcccAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgggggctattcttggagcgacagtgacaccggctccggagaaaatcaattggt                      <  2:72255‑M2/144‑120 (MQ=255)                                                                                                                       ccgcccAGGTCGATCAGGCATGCTTtgggcgggccctagaaacaactaaccccctggtgcgcagtacaggtctgggacctgcccgaggcgtgggggctattcttggagcgacagtgacaccggctccggagaaaatcaattggt                      >  1:72255‑M2/1‑25 (MQ=255)                                                                                                                                     cAGGCATGCTTTGGGCGTGCCTCAAACCATTTGGTGACCACCAAAACGGTCAGTTAGGCCTACTGCTTCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGaa  <  1:362548/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            CTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGATGTCTATAAGGTCCGCATCGAA  >  NC_002947/25626‑25907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.