New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 204937	21 (0.660)	4 (0.130)	4/238	NT	14.2%	coding (10443/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 211590	28 (0.920)					coding (17096/26049 nt)	PP_0168	putative surface adhesion protein

CGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTC  >  NC_002947/204799‑205084                                                                                                                                           |                                                                                                                                                    cGCTGCTCAGGGAGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAgtggt                                                                                                                                          <  1:967/150‑1 (MQ=255)      ctCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCacttcgtcggtggtat                                                                                                                                     <  1:80102‑M1/150‑17 (MQ=255)            gTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGt                                                                                                                                  <  2:832773/147‑1 (MQ=255)            gTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGt                                                                                                                                  >  1:832773/1‑147 (MQ=255)                tgaCGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCAGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCAAAGTTGACagc                                                                                                                           >  1:358855/1‑150 (MQ=255)                     tCTACAACGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGAccc                                                                                                                      <  1:34592/150‑1 (MQ=255)                          aaCGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCacttcgtcggtggtatcggtcacttgaaccgaagcc                                                                                                                 <  1:838473‑M1/150‑37 (MQ=255)                                  tGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGa                                                                                                         >  1:586604/1‑150 (MQ=255)                                      cAGATCAGCCTGGGTATCACGGCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGc                                                                                                     >  1:333213/1‑150 (MQ=255)                                       aGATCAGCCTGGGTATCACGTCTGCTGTTGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTCACCGAAgggg                                                                                                    <  1:745691/150‑3 (MQ=255)                                             gCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTgaga                                                                                              >  2:783796/1‑150 (MQ=255)                                                                  tgGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGa                                                                         <  1:210463/150‑1 (MQ=255)                                                                   ggATGTAGACGGTCGCACCTTCGAAAACCTTGAGCTGGGCGGTGCGGCTTCCGCTCAAGTCTCCGATACCACCGACGAAGTGGTGGCCAAGTTCACCGCGACCACTTCAGTGCCCGTAGGCGGTGAGATCACTTACACCCCTACACTGAc                                                                        <  2:479883/150‑1 (MQ=17)                                                                          gACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACaaa                                                                 <  2:333213/150‑1 (MQ=255)                                                                           aCGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAg                                                                <  1:783796/150‑1 (MQ=255)                                                                              gTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACg                                                             <  2:796215/150‑1 (MQ=255)                                                                               tCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCacttcgtcggtggtatcggtca                                                                                                                               <  2:408559‑M1/83‑23 (MQ=255)                                                                               tCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCacttcgtcggtggtatcggtaa                                                                                                                               >  1:408559‑M1/1‑61 (MQ=255)                                                                                    ccTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGc                                                       <  2:586604/150‑1 (MQ=255)                                                                                       tCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGAc                                                              <  1:473572/140‑1 (MQ=255)                                                                                       tCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGAc                                                              >  2:473572/1‑140 (MQ=255)                                                                                          aaaaCCTGGAGATGGGCGGTGCGGCTTAAGTTCAAGTGACAGATACAACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGGGAGATCACTTACACCATGACCCTGACCAACAAAGACGGCTTGCCGATCa                                                 >  1:249888/1‑150 (MQ=17)                                                                                                                          cAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGCATTGACCTTCACGCTGAGc                 >  2:586031/1‑150 (MQ=37)                                                                                                                                aCCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGCATTGACCTTCACGCTGAGCGACGGc           >  1:587207/1‑150 (MQ=32)                                                                                                                                 ccGATACCAAGGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCa          >  2:212988/1‑150 (MQ=17)                                                                                                                                       ccaccacttcgtcggtggtatcggtcacttgaaccgaagccgcaccgcccagctcgaggttctcgaaggtcgcaccagtggcgtccaccgccgagttgatgcccaggctgatctggccagcgtcgttgtaaacgtcatcaccctgcgcag    >  2:643368‑M1/1‑5 (MQ=255)                                                                                                                                         accacttcgtcggtggtatcggtcacttgaaccgaagccgcaccgcccagctcgaggttctcgaaggtcgcaccagtggcgtccaccgccgagttgatgcccaggctgatctggccagcgtcgttgtaaacgtcatcaccctgcgcagcg  >  2:197912‑M1/1‑3 (MQ=255)                                                                                                                                           |                                                                                                                                                    CGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCACGTCTGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGTTGACCGCGACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATTACCCTGACCAACAAAGACGGCTTGCCGATCAATAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTC  >  NC_002947/204799‑205084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.