New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 204937	21 (0.660)	4 (0.130)	4/238	NT	14.2%	coding (10443/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 211590	28 (0.920)					coding (17096/26049 nt)	PP_0168	putative surface adhesion protein

CGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACCCTGAGCGACGGCAAAACCGTCATCACC  >  NC_002947/211444‑211735                                                                                                                                                   |                                                                                                                                                  cGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTggt                                                                                                                                                >  2:197912‑M2/1‑147 (MQ=255)   cTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTggtgg                                                                                                                                              >  2:643368‑M2/1‑145 (MQ=255)         aGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGc                                                                                                                                        <  2:179791/150‑1 (MQ=38)                          aaCGTCGCGGTCCAGATCACCATGGGAATAACCTCGGCGGCGGAGGCCATGGGTTCGACCGTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCg                                                                                                                       <  2:649921/150‑1 (MQ=14)                          aaCGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGcc                                                                                                                           >  1:849129/1‑146 (MQ=255)                          aaCGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGcc                                                                                                                           <  2:849129/146‑1 (MQ=255)                            cgacgCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACTTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGt                                                                                                                     <  1:693622/150‑1 (MQ=255)                                    gCCAGATCAGCCTGGGCATCTTCTCGGCGGTGCACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTTTTTGACGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAg                                                                                                             <  1:363019/150‑1 (MQ=14)                                       aGATCAGCCTGGGCATCAACTCGGCGGTGGACGGCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAggtg                                                                                                          <  2:708224/150‑1 (MQ=255)                                        gATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAggtgg                                                                                                         <  1:269377/150‑1 (MQ=255)                                            aGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACACCTTCGGTCACCGAAggcgtcgcg                                                                                                     <  1:119916/150‑8 (MQ=14)                                               cTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAggtg                                                                                                          >  2:817460/1‑142 (MQ=255)                                               cTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAggtg                                                                                                          <  1:817460/142‑1 (MQ=255)                                                    cATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTa                                                                                             <  2:274393/150‑1 (MQ=255)                                                    cATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTa                                                                                             >  1:274393/1‑150 (MQ=255)                                                     aTCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCg                                                                                                                       <  2:844121/123‑1 (MQ=255)                                                     aTCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCg                                                                                                                       >  1:844121/1‑123 (MQ=255)                                                                       gCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACcaac                                                                          >  1:56208/1‑150 (MQ=255)                                                                                     cTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGcc                                                            <  2:62880/150‑1 (MQ=255)                                                                                                tCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGgtggtg                                                                                                       <  1:600002/96‑1 (MQ=255)                                                                                                tCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGgtggtg                                                                                                       >  2:600002/1‑96 (MQ=255)                                                                                                tCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAAcc                                                 >  2:557453/1‑150 (MQ=255)                                                                                                tCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGATGGTGAGATCACCTACACCATCACTCTGACCAACAAAGATGGTCTGCCGATCaacaaca                                                 >  2:195421/1‑149 (MQ=255)                                                                                                     cTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGt                                            <  2:788210/150‑1 (MQ=255)                                                                                                                ggCTTCGGTTCAAGTGACCGATACCACCGACGAAGTggtggtatcggtcacttgaaccgaagccgcaccgcccagctccaggttttcgaaggtgcgaccgtctacatccacagcagacgtgatacccaggctgatctggccagcgtcgtt                                 <  1:838473‑M2/150‑115 (MQ=255)                                                                                                                      tgTTAAAGTCACCGATACCACCGACAAAGTGGTGGACAAGCTGACCCCGACCACATAGGTGCCCTTATGTTGTGACATCCACTACACCATCACACTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACCCt                           <  1:195421/149‑1 (MQ=11)                                                                                                                        ttCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTGGGTGACCGAAGGTGGTGAGATCACCTGCACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTCCATTAACCTTCACCCTGa                         >  2:273995/1‑150 (MQ=255)                                                                                                                              ttaccGATACCACCGACGAAGTggtggtatcggtcacttgaaccgaagccgcaccgcccagctccaggttttcgaaggtgcga                                                                                      >  1:408559‑M2/3‑22 (MQ=255)                                                                                                                              tGACCGATACCACCGACGAAGTggtggtatcggtcacttgaaccgaagccgcaccgcccagctccaggttttcgaaggtgcga                                                                                      <  2:408559‑M2/83‑62 (MQ=255)                                                                                                                              tGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACCCTGAGCGACg                   >  1:786586/1‑150 (MQ=255)                                                                                                                              tGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACCCTGAGCGACg                   >  1:77113/1‑150 (MQ=255)                                                                                                                                    aTACCACCGACGAAGTggtggtatcggtcacttgaaccgaagccgcaccgcccagctccaggttttcgaaggtgcgaccgtctacatccacagcagacgtgatacccaggctgatctggccagcgtcgttgtagacgtcatcaccctgag             <  1:80102‑M2/150‑135 (MQ=255)                                                                                                                                    aTACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGAt                                                                    <  1:119325/95‑1 (MQ=255)                                                                                                                                    aTACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGAt                                                                    >  2:119325/1‑95 (MQ=255)                                                                                                                                               gaAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCCCAGTGCATTGACCTTCACCCTGAGCGACGGCAAAACCGTCATCAcc  <  1:745384/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCGGCTTCGGTTCAAGTGACCGATACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGACCGAAGGTGGTGAGATCACCTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACCCTGAGCGACGGCAAAACCGTCATCACC  >  NC_002947/211444‑211735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.