New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 228165	20 (0.630)	5 (0.160)	6/238	NT	18.8%	coding (991/2088 nt)	PP_0176	putative efflux transporter
	?	NC_002947	= 228187	24 (0.790)					coding (1013/2088 nt)	PP_0176	putative efflux transporter

ACAGCGCTTCGGTAGCGCACTGGGCCACGTTGCACGAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCACGGTTCTG  >  NC_002947/228022‑228305                                                                                                                                                |                                                                                                                                              aCAGCGCTTCGGTAGCGCACTGGGCCACGTTGCACGAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAc‑tgct                                                                                                                                        <  1:538615/150‑1 (MQ=255)                       ggCCACGTTGCACGGGCAGATCGGCGGCCTTCATCCCGCTACAGCCGCCCTCGACCAGCGCGCCCAGCTGCTGTTGTCCAACGCCCTCTACCGCCTGCCCGAATGTGCCGACCTGTAGCAGCAC‑TGCTGCACCCTGCAGCACGCCCTGct                                                                                                                  <  2:493325/150‑2 (MQ=255)                                  aCGAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGatgatg                                                                                                       >  1:109041/1‑150 (MQ=255)                                    gAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAc‑tgc                                                                                                                                         >  1:432884/1‑114 (MQ=255)                                    gAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAc‑tgc                                                                                                                                         <  2:432884/114‑1 (MQ=255)                                      gCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGgcgtgctgcagggtgcagcagtcctgcca                                                                                                                  <  2:494615‑M1/136‑30 (MQ=255)                                      gCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTcctgcca                                                                                                                 <  1:494615‑M2/136‑8 (MQ=255)                                           tCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCtt                                                                                              <  2:680566/150‑1 (MQ=255)                                             ggCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCgatga                                                                                                         >  1:294137/1‑137 (MQ=255)                                             ggCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCgatga                                                                                                         <  2:294137/137‑1 (MQ=255)                                                           cGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTcctgccacaggt                                                                                                            <  1:428463‑M2/120‑13 (MQ=255)                                                           cGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTcctgccacaggt                                                                                                            >  2:428463‑M2/1‑108 (MQ=255)                                                              tACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCa                                                                           <  1:227104/150‑1 (MQ=255)                                                                     gccCTCGACCAGCGCGCCGAGCTGATGATCGCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTggcgg                                                                    >  1:22420/1‑150 (MQ=255)                                                                         tCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTggcggc                                                                   >  1:490169/1‑147 (MQ=255)                                                                         tCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTggcggc                                                                   <  2:490169/147‑1 (MQ=255)                                                                                    gcCGAGCTGCTGTTGTCCAACGCCATCATCCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACa                                                     <  1:217300/150‑1 (MQ=255)                                                                                          ctgctgTTGTCCAACGCCCTGTCCCGCCTGGCCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGttt                                               <  1:387727/150‑1 (MQ=255)                                                                                                   tCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGt                                      <  2:574354/150‑1 (MQ=255)                                                                                                     cAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGgcgtgctgcagggtgcagcagtcct                                                                                                                      >  1:143689‑M1/1‑44 (MQ=255)                                                                                                     cAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGgcgtgctgcagggtgcagcagtcct                                                                                                                      <  2:143689‑M1/69‑26 (MQ=255)                                                                                                      aaCGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCaa                                                                                                   >  1:712816/1‑86 (MQ=255)                                                                                                      aaCGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCaa                                                                                                   <  2:712816/86‑1 (MQ=255)                                                                                                           ccTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCt                                                                                               <  1:69739/85‑1 (MQ=255)                                                                                                           ccTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCt                                                                                               >  2:69739/1‑85 (MQ=255)                                                                                                                 ccGCCTGACCGAATGGGCCGACCTGTGGCCGGAC‑TGCTGCACTCTGCAGAACGAAATGCGTACCGATGATGCCAAGCCTTGACGTGCGGTGTATCGCCACTGGCGGCTGGGCAGCCTGACAGCGTTTTTTGATCGTGGCCTGATGttctt                        >  2:166917/1‑149 (MQ=255)                                                                                                                       gACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGt                  <  2:409167/150‑1 (MQ=255)                                                                                                                                     aCCTGTGGCAGGactgctgcaccctgcagcacgccctgccacaggtcggcccattcggtcaggcggtacagggcgttggacaacagcagctcggcgcgctggtcgagggcggctgtagcg                                   >  2:428463‑M1/1‑12 (MQ=255)                                                                                                                                     aCCTGTGGCAGGactgctgcaccctgcagcacgccctgccacaggtcggcccattcggtcaggcggtacagggcgttggacaacagcagctcggcgcgctggtcgagggcggctgtagcg                                   <  1:428463‑M1/120‑109 (MQ=255)                                                                                                                                       cTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTCATGCTCTACTCGGTAGCCTCCACGGTTCTg  >  2:315046/1‑150 (MQ=255)                                                                                                                                          tgGCAGGactgctgcaccctgcagcacgccctgccacaggtcggcccattcggtcaggcggtacagggcgttggacaacagcagctcggcgcgctggtcgagggcggctgtagcgggctgcaggcggccgatctgc              <  1:494615‑M1/136‑130 (MQ=255)                                                                                                                                          tgGCAGGAC‑TGCTGCACCCTGCAGCACGCcctgccacaggtcggcccattcggtcaggcggtacagggcgttggacaacagcagctcggcgcgctggtcgagggcggctgtagcgggctgcaggcggccgatctgc             <  2:494615‑M2/136‑108 (MQ=255)                                                                                                                                              aGGAC‑TGCTGCACCCTGCAGCACGCcctgccacaggtcggcccattcggtcaggcggtacagggcgttg                                                                            <  2:143689‑M2/69‑45 (MQ=255)                                                                                                                                              aGGAC‑TGCTGCACCCTGCAGCACGCcctgccacaggtcggcccattcggtcaggcggtacagggcgttg                                                                            >  1:143689‑M2/1‑25 (MQ=255)                                                                                                                                                |                                                                                                                                              ACAGCGCTTCGGTAGCGCACTGGGCCACGTTGCACGAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCACGGTTCTG  >  NC_002947/228022‑228305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.