New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 228165	20 (0.630)	5 (0.160)	6/238	NT	18.8%	coding (991/2088 nt)	PP_0176	putative efflux transporter
	?	NC_002947	= 228187	24 (0.790)					coding (1013/2088 nt)	PP_0176	putative efflux transporter

GGCCACGTTGCACGAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCACGGTTCTGGCGATCGTGGTCGCCTGCGGCCTGTGGATC  >  NC_002947/228044‑228335                                                                                                                                                 |                                                                                                                                                     ggCCACGTTGCACGGGCAGATCGGCGGCCTTCATCCCGCTACAGCCGCCCTCGACCAGCGCGCCCAGCTGCTGTTGTCCAACGCCCTCTACCGCCTGCCCGAATGTGCCGACCTGTAGCAGCAC‑TGCTGCACCCTGCAGCACGCCCTGct                                                                                                                                                <  2:493325/150‑2 (MQ=255)            aCGAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGatgatg                                                                                                                                     >  1:109041/1‑150 (MQ=255)                gCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTcctgcca                                                                                                                                               <  1:494615‑M2/136‑8 (MQ=255)                     tCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCtt                                                                                                                            <  2:680566/150‑1 (MQ=255)                       ggCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCgatga                                                                                                                                       >  1:294137/1‑137 (MQ=255)                       ggCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCgatga                                                                                                                                       <  2:294137/137‑1 (MQ=255)                                     cGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTcctgccacaggt                                                                                                                                          <  1:428463‑M2/120‑13 (MQ=255)                                     cGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTcctgccacaggt                                                                                                                                          >  2:428463‑M2/1‑108 (MQ=255)                                        tACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCa                                                                                                         <  1:227104/150‑1 (MQ=255)                                               gccCTCGACCAGCGCGCCGAGCTGATGATCGCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTggcgg                                                                                                  >  1:22420/1‑150 (MQ=255)                                                   tCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTggcggc                                                                                                 >  1:490169/1‑147 (MQ=255)                                                   tCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTggcggc                                                                                                 <  2:490169/147‑1 (MQ=255)                                                              gcCGAGCTGCTGTTGTCCAACGCCATCATCCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACa                                                                                   <  1:217300/150‑1 (MQ=255)                                                                    ctgctgTTGTCCAACGCCCTGTCCCGCCTGGCCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGttt                                                                             <  1:387727/150‑1 (MQ=255)                                                                             tCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGt                                                                    <  2:574354/150‑1 (MQ=255)                                                                                aaCGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCaa                                                                                                                                 <  2:712816/86‑1 (MQ=255)                                                                                aaCGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCaa                                                                                                                                 >  1:712816/1‑86 (MQ=255)                                                                                     ccTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCt                                                                                                                             <  1:69739/85‑1 (MQ=255)                                                                                     ccTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCt                                                                                                                             >  2:69739/1‑85 (MQ=255)                                                                                           ccGCCTGACCGAATGGGCCGACCTGTGGCCGGAC‑TGCTGCACTCTGCAGAACGAAATGCGTACCGATGATGCCAAGCCTTGACGTGCGGTGTATCGCCACTGGCGGCTGGGCAGCCTGACAGCGTTTTTTGATCGTGGCCTGATGttctt                                                      >  2:166917/1‑149 (MQ=255)                                                                                                 gACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGt                                                <  2:409167/150‑1 (MQ=255)                                                                                                                 cTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTCATGCTCTACTCGGTAGCCTCCACGGTTCTg                                >  2:315046/1‑150 (MQ=255)                                                                                                                    tgGCAGGAC‑TGCTGCACCCTGCAGCACGCcctgccacaggtcggcccattcggtcaggcggtacagggcgttggacaacagcagctcggcgcgctggtcgagggcggctgtagcgggctgcaggcggccgatctgc                                           <  2:494615‑M2/136‑108 (MQ=255)                                                                                                                        aGGAC‑TGCTGCACCCTGCAGCACGCcctgccacaggtcggcccattcggtcaggcggtacagggcgttg                                                                                                          <  2:143689‑M2/69‑45 (MQ=255)                                                                                                                        aGGAC‑TGCTGCACCCTGCAGCACGCcctgccacaggtcggcccattcggtcaggcggtacagggcgttg                                                                                                          >  1:143689‑M2/1‑25 (MQ=255)                                                                                                                           aC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCACGGTTCTGGCGATCGTgg                      >  1:562699/1‑150 (MQ=255)                                                                                                                                ctgcACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGa                                                                                     >  2:10623/1‑83 (MQ=255)                                                                                                                                ctgcACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGa                                                                                     <  1:10623/83‑1 (MQ=255)                                                                                                                                    aCCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCACGGTTCTGGCGATCGTGGTCGCCTGc              <  2:562699/150‑1 (MQ=255)                                                                                                                                     cccTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCAAGCGCCGGGGATGGACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCACGGTTCTGGCGATCGTGGTCGCCTGCg             <  2:22420/150‑1 (MQ=255)                                                                                                                                            gcaCGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCAGCCTGACAGCGTATTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCACGGTTCTGGCGATCGTGGTCGCATACGGCCtgtg      >  1:176004/1‑150 (MQ=255)                                                                                                                                                gCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCAAGGTTCTGGCGATCGTGGTCGCCTGCGGCCTGTGGATc  <  1:524951/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GGCCACGTTGCACGAGCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCGTACCGATGATGCCAAGCCTTGGCGTGCGGTGTATCGCCACTGGCGGCTGGGCCGCCTGACAGCGTTTTTCGATCGTGGCCTGATGCTCTACTCGGTAGCCTCCACGGTTCTGGCGATCGTGGTCGCCTGCGGCCTGTGGATC  >  NC_002947/228044‑228335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.