| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 235331 = | 29 (0.920) | 11 (0.400) | 10/216 | NT | 31.8% | intergenic (+28/+97) | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase |
| ? | NC_002947 | 235390 = | 22 (0.800) | intergenic (+87/+38) | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase | |||||
TCCCGCAGGCCAAGGCGTTGCTGCAACTGATGGGGGAGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCT > NC_002947/235182‑235477 | gtgctgacgctggaaggctcggtgaatgcgcgtgaccacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacg < 2:332007‑M1/1‑1 (MQ=255) ccGCAGGCCAAGGCGTTGCTGCAACTGATGGGGGCGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCAGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGGCCTTCGCGGGCATGcc > 2:41564/1‑150 (MQ=255) gacgctggaaggctcggtgaatgcgcgtgaccacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccagggcgagggcttcgccctcgttcgcgggcatGCCCGc < 1:161200‑M1/6‑1 (MQ=255) cAAGGCGTTGCTGCAACTGATGGGGGAGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCca > 1:713196/1‑150 (MQ=255) aaggctcggtgaatgcgcgtgaccacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAg > 1:297684‑M1/137‑150 (MQ=255) aaggctcggtgaatgcgcgtgaccacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAg > 1:47630‑M1/137‑150 (MQ=255) gcgtgaccacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTc < 2:242677‑M1/8‑1 (MQ=255) gcgtgaccacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTc > 1:242677‑M1/121‑128 (MQ=255) gagaACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACtt < 2:301890/150‑1 (MQ=255) agaACCCCCACATGACGCGGATCTTGGCGGTCGAGCGTGAATCGATCGCCGCCTTCACGGAGAGGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGGACCGTTTTTGAAACTtg < 2:437671/150‑1 (MQ=255) attggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgccaatcccccaaggcgagggcttcgccctcgttcgcgggcatGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGc < 2:545687‑M1/40‑1 (MQ=255) cccGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCa > 2:429426/1‑150 (MQ=255) ggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑gg > 1:332007‑M1/100‑150 (MQ=255) gcgGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCa > 2:252348/1‑118 (MQ=255) gcgGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCa < 1:252348/118‑1 (MQ=255) gcgGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGa < 2:759458/150‑1 (MQ=255) cgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgccaatcccccaaggcgagggcttcgccctcgttcgcgggcatGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGa > 1:545687‑M1/98‑150 (MQ=255) ggATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGttttt < 1:333918/124‑1 (MQ=255) ggATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGttttt > 2:333918/1‑124 (MQ=255) aTCTTGGCGGACAAGGAAGCGCCGATGCCGCGCTTCATGGAGATGACCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCgg < 2:472295/150‑1 (MQ=255) gctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACtt < 1:648501‑M1/36‑1 (MQ=255) gctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACtt > 2:648501‑M1/81‑116 (MQ=255) ggAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCAGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCAGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAAc > 1:814591/1‑150 (MQ=255) aGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAg < 2:718667/150‑1 (MQ=255) gCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCtgt‑g > 1:180675/1‑125 (MQ=255) gCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCtgt‑g < 2:180675/125‑1 (MQ=255) cATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTg > 1:392832/1‑150 (MQ=255) aTGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGTCCGCGAACGAGGGCGAAGCCCTCGCCTTgg < 2:842072/150‑1 (MQ=255) tGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTcc < 1:46959/65‑1 (MQ=255) tGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTcc > 2:46959/1‑65 (MQ=255) tGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTGTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTggg > 1:597456/1‑150 (MQ=255) ggAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgggg > 1:768578/1‑150 (MQ=255) gagaTGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTCCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTggggg > 1:260273/1‑150 (MQ=255) cAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGAc < 2:597456/150‑1 (MQ=255) gCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGAGAGGCTCCACGTACGCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCaa > 2:590511/1‑150 (MQ=255) ccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCtgt‑g < 2:230759‑M1/50‑1 (MQ=255) ccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCtgt‑g > 1:230759‑M1/37‑86 (MQ=255) ccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCtgt < 2:325176‑M1/49‑1 (MQ=255) ccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCtgt > 1:325176‑M1/35‑83 (MQ=255) gagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCtgt > 1:51232‑M1/28‑76 (MQ=255) gagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCtgt < 2:51232‑M1/49‑1 (MQ=255) tCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCGGCACCGTTTTTGAAACTTGTGCATTCCCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGAGCGAAGCCCTCGCCTTGGGGGCTTAGCGAGCCGCCAACAGGGCCTTGcc > 2:259739/1‑150 (MQ=39) tGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCac > 1:110200/1‑150 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg > 1:70686/1‑106 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg < 2:70686/106‑1 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga < 2:112291/117‑1 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga > 1:112291/1‑117 (MQ=255) cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGACACATGTGTA‑AACATTTGGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt > 1:363756/1‑150 (MQ=255) cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt > 2:58942/1‑150 (MQ=255) cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt < 2:713196/150‑1 (MQ=255) | TCCCGCAGGCCAAGGCGTTGCTGCAACTGATGGGGGAGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCT > NC_002947/235182‑235477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |