New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	235331 =	29 (0.920)	11 (0.400)	10/216	NT	31.8%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	22 (0.800)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase

GGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCAC  >  NC_002947/235252‑235538                                                                                                                                            |                                                                                                                                                     ggAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCAGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCAGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAAc                                                                                                                                           >  1:814591/1‑150 (MQ=255)    aGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAg                                                                                                                                        <  2:718667/150‑1 (MQ=255)                      cATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTg                                                                                                                      >  1:392832/1‑150 (MQ=255)                       aTGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGTCCGCGAACGAGGGCGAAGCCCTCGCCTTgg                                                                                                                     <  2:842072/150‑1 (MQ=255)                        tGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTGTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTggg                                                                                                                    >  1:597456/1‑150 (MQ=255)                         ggAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgggg                                                                                                                   >  1:768578/1‑150 (MQ=255)                          gagaTGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTCCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTggggg                                                                                                                  >  1:260273/1‑150 (MQ=255)                                     cAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGAc                                                                                                       <  2:597456/150‑1 (MQ=255)                                          gCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGAGAGGCTCCACGTACGCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCaa                                                                                                  >  2:590511/1‑150 (MQ=255)                                                      tCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCGGCACCGTTTTTGAAACTTGTGCATTCCCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGAGCGAAGCCCTCGCCTTGGGGGCTTAGCGAGCCGCCAACAGGGCCTTGcc                                                                                      >  2:259739/1‑150 (MQ=39)                                                        tGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCac                                                                                    >  1:110200/1‑150 (MQ=255)                                                                   ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg                                                                                                                     <  2:70686/106‑1 (MQ=255)                                                                   ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg                                                                                                                     >  1:70686/1‑106 (MQ=255)                                                                   ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga                                                                                                          >  1:112291/1‑117 (MQ=255)                                                                   ccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga                                                                                                          <  2:112291/117‑1 (MQ=255)                                                                             cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGACACATGTGTA‑AACATTTGGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt                                                               >  1:363756/1‑150 (MQ=255)                                                                             cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt                                                               <  2:713196/150‑1 (MQ=255)                                                                             cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt                                                               >  2:58942/1‑150 (MQ=255)                                                                                  CCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga                                                                                                          <  1:580169‑M1/102‑1 (MQ=255)                                                                                  CCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga                                                                                                          >  2:580169‑M1/1‑102 (MQ=255)                                                                                       tcccacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTGGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgccggcg                                                      >  1:545687‑M2/54‑150 (MQ=255)                                                                                       CCCACAGGTCTGCACCGTTTTTGAAACTTGTGCGTTACCTGT‑GGGAGGGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACTCACCTgcgccggcgc                                                     >  2:814591‑M1/1‑150 (MQ=255)                                                                                         ccacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgccggcgcc                                                    >  1:332007‑M2/52‑150 (MQ=255)                                                                                          cacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgggg                                                                                                                   >  1:230759‑M2/51‑86 (MQ=255)                                                                                          cacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgggg                                                                                                                   <  2:230759‑M2/36‑1 (MQ=255)                                                                                          ACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGt                                                  <  2:208190‑M1/150‑1 (MQ=255)                                                                                           acaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTc                                                                                                                            <  2:51232‑M2/27‑1 (MQ=255)                                                                                           acaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTc                                                                                                                            >  1:51232‑M2/50‑76 (MQ=255)                                                                                           acaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg                                                                                                                     <  2:325176‑M2/34‑1 (MQ=255)                                                                                           acaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg                                                                                                                     >  1:325176‑M2/50‑83 (MQ=255)                                                                                              GTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGtaccc                                              <  2:407658‑M1/150‑2 (MQ=255)                                                                                                    gcacaagtttcaaaaacggtgcagacctgtgggagcgggcATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTGGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAAt                                         <  2:545687‑M2/110‑1 (MQ=255)                                                                                                      cGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAAtgtg                                      <  1:208190/150‑1 (MQ=255)                                                                                                        aagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGgcagc                                                                       >  2:648501‑M2/37‑116 (MQ=255)                                                                                                        aagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGgcagc                                                                       <  1:648501‑M2/80‑1 (MQ=255)                                                                                                           ttGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGACGAAGCCCTAGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAc                                 >  1:131729/1‑150 (MQ=255)                                                                                                             gAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAcgc                               <  2:768578/150‑1 (MQ=255)                                                                                                                aCTTTTGCATTTCCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGTATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCa                            <  1:429426/150‑1 (MQ=255)                                                                                                                      gCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCAcc                      >  2:238002/1‑150 (MQ=255)                                                                                                                        aTTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGGTTAGCGAGCCGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCAGTACCACCAATGGGCTCCCGCGCATTccacgg                    >  2:104061/1‑145 (MQ=255)                                                                                                                              ctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCtt               >  1:47630‑M2/15‑150 (MQ=255)                                                                                                                              ctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCtt               >  1:297684‑M2/15‑150 (MQ=255)                                                                                                                                    gagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAcgc                               >  1:242677‑M2/9‑128 (MQ=255)                                                                                                                                    gagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAcgc                               <  2:242677‑M2/120‑1 (MQ=255)                                                                                                                                      gcgggcATGCCCGCGAACGAGGGCGAAGCCCTCGCCCTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTc       <  1:161200‑M2/144‑1 (MQ=255)                                                                                                                                           cGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCAc  <  2:332007‑M2/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                     GGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGT‑GGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCAC  >  NC_002947/235252‑235538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.