New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 318094	34 (1.070)	3 (0.100)	3/226	NT	9.4%	coding (1650/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	= 318134	27 (0.940)					coding (1610/1815 nt)	PP_0264	sensor histidine kinase

ATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGT  >  NC_002947/317950‑318243                                                                                                                                                 |                                                                                                                                                      atggggCAAAGTAGCGCCGGAGGCGGCGCCCGGCAGTTGGAGAGTCAGCATGGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGGCCAGGGTGCGCATCAGGCTTTCACGGATGGCCAGCCCCAGGGCCTGGGCCgggggctg                                                                                                                                                  <  2:408222/147‑5 (MQ=255)  ttGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCgg                                                                                                                                                 <  1:812419/150‑1 (MQ=255)                 ccAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTgaag                                                                                                                                  >  1:761589/1‑150 (MQ=255)                           ccACCCGCAGCTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCt                                                                                                                        >  1:194611/1‑150 (MQ=255)                             aCCCGCAGCTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTg                                                                                                                      <  2:15816/150‑1 (MQ=255)                                     cTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTc                                                                                                              <  2:462927‑M2/150‑2 (MQ=255)                                             tCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTccagggcct                                                                                                      >  2:629813‑M2/1‑141 (MQ=255)                                               aGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGagcacgccaaggagccgttcttcaccaccaagacccgcacccagggcctgg                                                                                                    <  1:554615‑M1/150‑52 (MQ=255)                                                gCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggc                                                                                                   <  1:630558/150‑1 (MQ=255)                                                 cATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcg                                                                                                  >  1:221511/1‑150 (MQ=255)                                                  aTTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCACAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcgg                                                                                                 >  1:481411/1‑150 (MQ=255)                                                       gcCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGaa                                                                                            >  2:595950/1‑150 (MQ=255)                                                         cACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGc                                                                                          >  2:809875/1‑150 (MQ=255)                                                          aCCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGcc                                                                                         <  1:462927/150‑1 (MQ=255)                                                            cTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGTCGGCTGAAGCCgg                                                                                       <  1:153003/150‑1 (MQ=255)                                                                            cagcatcagTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcggc                                                                                                <  2:42743/125‑1 (MQ=255)                                                                            cagcagcagTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcggc                                                                                                >  1:42743/1‑125 (MQ=255)                                                                                  cagTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAg                                                                 <  1:809875/150‑1 (MQ=255)                                                                                   agTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCtt                                                                                                                       <  2:766513/95‑1 (MQ=255)                                                                                   agTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCtt                                                                                                                       >  1:766513/1‑95 (MQ=255)                                                                                    gTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGt                                                               >  1:125826/1‑150 (MQ=255)                                                                                         ccGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGagcacgccaaggagccgttcttcaccaccaagacccgcacccagggcc                                                                                                       <  2:826531‑M1/105‑49 (MQ=255)                                                                                         ccGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGagcacgccaaggagccgttcttcaccaccaagacccgcacccagggcc                                                                                                       >  1:826531‑M1/1‑57 (MQ=255)                                                                                         ccGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAgg                                                                >  2:510227/1‑144 (MQ=255)                                                                                         ccGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAgg                                                                <  1:510227/144‑1 (MQ=255)                                                                                            cccAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCgggg                                                                                     <  1:419074/120‑1 (MQ=255)                                                                                            cccAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCgggg                                                                                     >  2:419074/1‑120 (MQ=255)                                                                                                 ggCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGtcatc                                                  <  2:273091/150‑1 (MQ=255)                                                                                                        aTCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACgctgc                                           >  2:276599/1‑150 (MQ=255)                                                                                                          cAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAg                                                             >  2:620360/1‑130 (MQ=255)                                                                                                          cAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAg                                                             <  1:620360/130‑1 (MQ=255)                                                                                                           aGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCg                                        <  1:133023/150‑1 (MQ=255)                                                                                                                 tCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcgg                                                                                                 <  2:325830/87‑1 (MQ=255)                                                                                                                 tCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcgg                                                                                                 >  1:325830/1‑87 (MQ=255)                                                                                                                    caGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGc                               <  1:595950/150‑1 (MQ=255)                                                                                                                    caGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGc                               <  2:221511/150‑1 (MQ=255)                                                                                                                       aTGGCCAGCACCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCCGTCATCACGCTGCTCGGCACTTAGCcac                            >  2:392771/1‑150 (MQ=255)                                                                                                                             gcacccagggcctggGCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAggcgg                      >  1:446693/4‑150 (MQ=255)                                                                                                                              cacccagggcctggGCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAggcggc                     >  2:575414/3‑150 (MQ=255)                                                                                                                                      cccaggcccTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTg             <  2:125826/150‑1 (MQ=255)                                                                                                                                       ccaggcccTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTccagggcctgggcctggggctggccatctgtgaaagcctgatgcgcgccctgggcggtgaactgctgctggccaaccacccggaaggtggcgcaatgct            <  1:554615‑M2/150‑100 (MQ=255)                                                                                                                                         aggcccTGGagcacgccaaggagccgttcttcaccaccaagacccgcacccagggcctgggcctggggctggccatctgtgaaagcctgatgcgcgccctgggcggtgaactgctgctggccaaccacccggaaggtggcgcaatgctga          >  2:629813‑M1/1‑9 (MQ=255)                                                                                                                                          ggcccTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTccagggcctgggcctggggctggccatctgtgaaagcctgatgcgcgccctgggcgg                                                      <  2:826531‑M2/105‑58 (MQ=255)                                                                                                                                          ggcccTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTccagggcctgggcctggggctggccatctgtgaaagcctgatgcgcgccctgggcgg                                                      >  1:826531‑M2/1‑48 (MQ=255)                                                                                                                                                 gagcacgccaaggagccgttcttcaccaccaagacccgcacccagggcctgggcctggggctggccatctgtgaaagcctgatgcgcgccctgggcggtgaactgctgctggccaaccacccggaaggtggcgcaatgctgactctccag  <  2:462927‑M1/150‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                      ATTGGGCAAAGTAGCGCCAGATGCGGCCACCCGCAGCTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGT  >  NC_002947/317950‑318243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.