New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 318094	34 (1.070)	3 (0.100)	3/226	NT	9.4%	coding (1650/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	= 318134	27 (0.940)					coding (1610/1815 nt)	PP_0264	sensor histidine kinase

CTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGTCAGGGCGTCGAGGGCATTGGCCAGCAGGTT  >  NC_002947/317986‑318273                                                                                                                                                     |                                                                                                                                            cTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTc                                                                                                                                            <  2:462927‑M2/150‑2 (MQ=255)         tCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTccagggcct                                                                                                                                    >  2:629813‑M2/1‑141 (MQ=255)            gCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggc                                                                                                                                 <  1:630558/150‑1 (MQ=255)             cATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcg                                                                                                                                >  1:221511/1‑150 (MQ=255)              aTTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCACAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcgg                                                                                                                               >  1:481411/1‑150 (MQ=255)                   gcCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGaa                                                                                                                          >  2:595950/1‑150 (MQ=255)                     cACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGc                                                                                                                        >  2:809875/1‑150 (MQ=255)                      aCCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGcc                                                                                                                       <  1:462927/150‑1 (MQ=255)                        cTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGTCGGCTGAAGCCgg                                                                                                                     <  1:153003/150‑1 (MQ=255)                                        cagcatcagTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcggc                                                                                                                              <  2:42743/125‑1 (MQ=255)                                        cagcagcagTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcggc                                                                                                                              >  1:42743/1‑125 (MQ=255)                                              cagTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAg                                                                                               <  1:809875/150‑1 (MQ=255)                                                gTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGt                                                                                             >  1:125826/1‑150 (MQ=255)                                                     ccGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAgg                                                                                              >  2:510227/1‑144 (MQ=255)                                                     ccGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAgg                                                                                              <  1:510227/144‑1 (MQ=255)                                                        cccAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCgggg                                                                                                                   >  2:419074/1‑120 (MQ=255)                                                        cccAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCgggg                                                                                                                   <  1:419074/120‑1 (MQ=255)                                                             ggCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGtcatc                                                                                <  2:273091/150‑1 (MQ=255)                                                                    aTCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACgctgc                                                                         >  2:276599/1‑150 (MQ=255)                                                                      cAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAg                                                                                           <  1:620360/130‑1 (MQ=255)                                                                      cAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAg                                                                                           >  2:620360/1‑130 (MQ=255)                                                                       aGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCg                                                                      <  1:133023/150‑1 (MQ=255)                                                                             tCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcgg                                                                                                                               >  1:325830/1‑87 (MQ=255)                                                                             tCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTggcgg                                                                                                                               <  2:325830/87‑1 (MQ=255)                                                                                caGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGc                                                             <  1:595950/150‑1 (MQ=255)                                                                                caGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGc                                                             <  2:221511/150‑1 (MQ=255)                                                                                   aTGGCCAGCACCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCCGTCATCACGCTGCTCGGCACTTAGCcac                                                          >  2:392771/1‑150 (MQ=255)                                                                                         gcacccagggcctggGCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAggcgg                                                    >  1:446693/4‑150 (MQ=255)                                                                                          cacccagggcctggGCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAggcggc                                                   >  2:575414/3‑150 (MQ=255)                                                                                                  cccaggcccTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTg                                           <  2:125826/150‑1 (MQ=255)                                                                                                   ccaggcccTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTccagggcctgggcctggggctggccatctgtgaaagcctgatgcgcgccctgggcggtgaactgctgctggccaaccacccggaaggtggcgcaatgct                                          <  1:554615‑M2/150‑100 (MQ=255)                                                                                                      ggcccTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTccagggcctgggcctggggctggccatctgtgaaagcctgatgcgcgccctgggcgg                                                                                    <  2:826531‑M2/105‑58 (MQ=255)                                                                                                      ggcccTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTccagggcctgggcctggggctggccatctgtgaaagcctgatgcgcgccctgggcgg                                                                                    >  1:826531‑M2/1‑48 (MQ=255)                                                                                                                 cGGGTCTTGGTGGTCAAGAACGGCTCCTTGGCGTGCCCCAGGGCCTGGCGGCCGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGTCAgg                            <  2:343125/150‑1 (MQ=255)                                                                                                                  gggTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGTCAggg                           >  2:730874/1‑150 (MQ=255)                                                                                                                                  gaaCGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGTCAGGGCGTCGAGGGCATTGGc           >  1:687327/1‑150 (MQ=255)                                                                                                                                   aaCGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTGGCCACAGGCGGCGCGGGCTTGCTTTTTCGGTTAGGGCGTTGTGGGCATTGGcc          >  1:812470/1‑150 (MQ=255)                                                                                                                                       gCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGTCAGGGCGTCGAGGGCATTGGCcatca      <  2:481411/150‑1 (MQ=255)                                                                                                                                           cTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGTCAGGGCGTCGAGGGCATTGGCCAGCAGGtt  <  1:276599/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                            CTGGAGAGTCAGCATTGCGCCACCTTCCGGGTGGTTGGCCAGCAGCAGTTCACCGCCCAGGGCGCGCATCAGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGGCACTTAGCCACAGGCGGCGCGGGTTGGCTTTTTCGGTCAGGGCGTCGAGGGCATTGGCCAGCAGGTT  >  NC_002947/317986‑318273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.