New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	636792 =	27 (0.850)	5 (0.160)	5/238	NT	16.7%	coding (1013/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
	?	NC_002947	636825 =	24 (0.790)					coding (1046/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase

CGCGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTG  >  NC_002947/636651‑636933                                                                                                                                              |                                                                                                                                              ccaggtcccagccgaggttggccggcgcataccagatcacctggtcagcgtcgttgacgctttctggcaggccgtcacgatgggcgccgagcttcatcgagttggagcgtggctcgatcaccgcgatcacaggcggctcccCCACCACGc                                                                                                                                       <  1:336151‑M1/9‑1 (MQ=255)      cATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGAc                                                                                                                                  <  2:659239/150‑1 (MQ=255)                  gtACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAg                                                                                                                      >  2:346462/1‑150 (MQ=255)                   tACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGc                                                                                                                     >  2:272748/1‑150 (MQ=255)                     ccGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCgg                                                                                                                   <  2:354828/150‑1 (MQ=255)                           gcataccagatcacctggtcagcgtcgttgacgctttctggcaggccgtcacgatgggcgccgagcttcatcgagttggagcgtggctcgatcaccgcgatcacaggcgcctcccCCACCACGCTCGACGGCCTGCGCAAGCGGGTgggg                                                                                                             >  2:336151‑M1/116‑150 (MQ=255)                                cATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGgc                                                                                                        >  1:779804/1‑150 (MQ=255)                                    gACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTGCGCCCACCCTCAGCCCGCCATTTCCACCACGCTCGATGGCCTGCGCAAGCGGGTGGGGGAGGCGCCt                                                                                                    <  1:346462/150‑1 (MQ=255)                                              gTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGTGAGGCGCCTGTGATCGCgg                                                                                          <  1:811584/150‑1 (MQ=255)                                                 cGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGa                                                                                       <  2:700556/150‑1 (MQ=255)                                                  gTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGAt                                                                                      >  2:734497/1‑150 (MQ=255)                                                             tCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCt                                                                           >  2:803510/1‑150 (MQ=255)                                                                   ggcgCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACt                                                                     >  2:851548/1‑150 (MQ=255)                                                                       cATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGAt                                                                 <  2:104547/150‑1 (MQ=255)                                                                          ggAGAAGGTTGCCGAACTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGGGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGaa                                                              <  1:272748/150‑1 (MQ=255)                                                                              aaGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTc                                                          >  1:698274/1‑150 (MQ=255)                                                                                 gTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGgc                                                       >  2:723815/1‑150 (MQ=255)                                                                                    gCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGcc                                                    >  1:152591/1‑150 (MQ=255)                                                                                      cGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCg                                                         <  2:496824/143‑1 (MQ=255)                                                                                      cGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCg                                                         >  1:496824/1‑143 (MQ=255)                                                                                            aCAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGa                                            >  1:789968/1‑150 (MQ=255)                                                                                                    agttggagcgtggctcgatcaccgcgatcacaggcgcctcccCCACCACGCTCGACGGCCTGCGCAAGCGGGTggggg                                                                                                            >  1:724465‑M1/43‑78 (MQ=255)                                                                                                    agttggagcgtggctcgatcaccgcgatcacaggcgcctcccCCACCACGCTCGACGGCCTGCGCAAGCGGGTggggg                                                                                                            <  2:724465‑M1/36‑1 (MQ=255)                                                                                                      aCCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCa                                  >  1:317902/1‑150 (MQ=255)                                                                                                          tcgaCGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGaaa                              <  1:723815/147‑1 (MQ=255)                                                                                                            tACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGc                            <  1:803510/150‑1 (MQ=255)                                                                                                                   aCTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGCCGGCCTGCGCAAGCGGGTGGGGGAGGCGCCCGTGATCACGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAacg                     >  2:153083/1‑150 (MQ=255)                                                                                                                     ttCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGCAAGCGTCAacgac                   >  2:370059/1‑150 (MQ=255)                                                                                                                        accgcgatcacaggcgcctcccCCACCACGCTCGACGGCCTGCGCAAGCgg                                                                                                                   <  2:169252‑M1/29‑1 (MQ=255)                                                                                                                        accgcgatcacaggcgcctcccCCACCACGCTCGACGGCCTGCGCAAGCgg                                                                                                                   >  1:169252‑M1/23‑51 (MQ=255)                                                                                                                               aTCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAgg         >  1:490926/1‑150 (MQ=255)                                                                                                                                cccGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGAGGGGGAGGCGCCTGTGATCGCGGTGATCGATCCACGCCCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTCCCAGAAAGCGCCAACGACGATGACCACGt        >  2:92830/2‑150 (MQ=255)                                                                                                                                      cGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTg  >  1:10837/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                              CGCGTCATGTAGGGGTGGTACCGGCCATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTG  >  NC_002947/636651‑636933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.