New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	636792 =	27 (0.850)	5 (0.160)	5/238	NT	16.7%	coding (1013/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
	?	NC_002947	636825 =	24 (0.790)					coding (1046/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase

ATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGG  >  NC_002947/636677‑636965                                                                                                                                                     |                                                                                                                                             gcataccagatcacctggtcagcgtcgttgacgctttctggcaggccgtcacgatgggcgccgagcttcatcgagttggagcgtggctcgatcaccgcgatcacaggcgcctcccCCACCACGCTCGACGGCCTGCGCAAGCGGGTgggg                                                                                                                                             >  2:336151‑M1/116‑150 (MQ=255)      cATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGgc                                                                                                                                        >  1:779804/1‑150 (MQ=255)          gACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTGCGCCCACCCTCAGCCCGCCATTTCCACCACGCTCGATGGCCTGCGCAAGCGGGTGGGGGAGGCGCCt                                                                                                                                    <  1:346462/150‑1 (MQ=255)                    gTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGTGAGGCGCCTGTGATCGCgg                                                                                                                          <  1:811584/150‑1 (MQ=255)                       cGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGa                                                                                                                       <  2:700556/150‑1 (MQ=255)                        gTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGAt                                                                                                                      >  2:734497/1‑150 (MQ=255)                                   tCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCt                                                                                                           >  2:803510/1‑150 (MQ=255)                                         ggcgCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACt                                                                                                     >  2:851548/1‑150 (MQ=255)                                             cATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGAt                                                                                                 <  2:104547/150‑1 (MQ=255)                                                ggAGAAGGTTGCCGAACTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGGGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGaa                                                                                              <  1:272748/150‑1 (MQ=255)                                                    aaGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTc                                                                                          >  1:698274/1‑150 (MQ=255)                                                       gTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGgc                                                                                       >  2:723815/1‑150 (MQ=255)                                                          gCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGcc                                                                                    >  1:152591/1‑150 (MQ=255)                                                            cGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCg                                                                                         >  1:496824/1‑143 (MQ=255)                                                            cGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCg                                                                                         <  2:496824/143‑1 (MQ=255)                                                                  aCAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGa                                                                            >  1:789968/1‑150 (MQ=255)                                                                          agttggagcgtggctcgatcaccgcgatcacaggcgcctcccCCACCACGCTCGACGGCCTGCGCAAGCGGGTggggg                                                                                                                                            >  1:724465‑M1/43‑78 (MQ=255)                                                                          agttggagcgtggctcgatcaccgcgatcacaggcgcctcccCCACCACGCTCGACGGCCTGCGCAAGCGGGTggggg                                                                                                                                            <  2:724465‑M1/36‑1 (MQ=255)                                                                            aCCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCa                                                                  >  1:317902/1‑150 (MQ=255)                                                                                tcgaCGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGaaa                                                              <  1:723815/147‑1 (MQ=255)                                                                                  tACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGc                                                            <  1:803510/150‑1 (MQ=255)                                                                                         aCTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGCCGGCCTGCGCAAGCGGGTGGGGGAGGCGCCCGTGATCACGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAacg                                                     >  2:153083/1‑150 (MQ=255)                                                                                           ttCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGCAAGCGTCAacgac                                                   >  2:370059/1‑150 (MQ=255)                                                                                                     aTCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAgg                                         >  1:490926/1‑150 (MQ=255)                                                                                                      cccGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGAGGGGGAGGCGCCTGTGATCGCGGTGATCGATCCACGCCCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTCCCAGAAAGCGCCAACGACGATGACCACGt                                        >  2:92830/2‑150 (MQ=255)                                                                                                            cGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTg                                  >  1:10837/1‑150 (MQ=255)                                                                                                                 cccccacccgcttgcgcaggccgtcgagcgtggtggGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACt                                                                                                     >  1:724465‑M2/37‑78 (MQ=255)                                                                                                                 cccccacccgcttgcgcaggccgtcgagcgtggtggGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACt                                                                                                     <  2:724465‑M2/42‑1 (MQ=255)                                                                                                                  ccccacccgcttgcgcaggccgtcgagcgtggtggGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATgc                            >  2:336151‑M2/36‑150 (MQ=255)                                                                                                                     CACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGt                                        >  2:381647‑M1/1‑135 (MQ=255)                                                                                                                     CACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGt                                        <  1:381647‑M1/135‑1 (MQ=255)                                                                                                                     CACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGcc                         <  2:599495‑M1/150‑1 (MQ=255)                                                                                                                       CCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCgg                       >  2:698274‑M1/1‑150 (MQ=255)                                                                                                                        ccgcttgcgcaggccgtcgagcgtggtggGGGAGGCGCCTGTGATCGCGGt                                                                                                                         <  2:169252‑M2/22‑1 (MQ=255)                                                                                                                        ccgcttgcgcaggccgtcgagcgtggtggGGGAGGCGCCTGTGATCGCGGt                                                                                                                         >  1:169252‑M2/30‑51 (MQ=255)                                                                                                                        CACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGc                      <  2:515430‑M1/150‑1 (MQ=255)                                                                                                                                      tGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTggg        >  2:510962/1‑150 (MQ=255)                                                                                                                                            gcgtggtggGGGAGCCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTgg  <  1:336151‑M2/141‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             ATGGGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATCCGACCGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCGCCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGG  >  NC_002947/636677‑636965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.