New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 93845843 (1.360)3 (0.100) 3/232 NT 7.4% coding (7167/18933 nt) PP_0806 surface adhesion protein
?NC_002947 = 938510 35 (1.180)coding (7115/18933 nt) PP_0806 surface adhesion protein

GTTGACCGAGCCGTTGGCCAGTACATTGCCCTGGGCATCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCAC  >  NC_002947/938314‑938607
                                                                                                                                                |                                                                                                                                                     
gTTGACCGAGCCGTTGGCCAGTACCTTGCCCTGGGCATCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGAt                                                                                                                                                  >  2:279830/1‑150 (MQ=255)
          ccGTTGGCCAGTACATTGCCCTGGGCATAGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGcgcg                                                                                                                                        >  2:342059/1‑150 (MQ=255)
                        aTTGCCCTGGGCATCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCgccggc                                                                                                                          >  2:789239/1‑150 (MQ=255)
                            cccTGGGCATCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTg                                                                                                                      >  1:117084/1‑150 (MQ=255)
                            cccTGGGCATCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTg                                                                                                                      >  1:471292/1‑150 (MQ=255)
                              cTGGGCATCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGa                                                                                                                    <  2:645505/150‑1 (MQ=255)
                                gggCATCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGAAGGCCGGGGAgg                                                                                                                  >  2:278519/1‑150 (MQ=255)
                                    aTCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGCGCTGGGCGCCGGCCCGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGtt                                                                                                              >  1:425003/1‑150 (MQ=255)
                                    aTCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACTGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGtt                                                                                                              >  2:149350/1‑150 (MQ=255)
                                         gcACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGcgcg                                                                                                                                        >  2:33277/1‑119 (MQ=255)
                                         gcACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGcgcg                                                                                                                                        <  1:33277/119‑1 (MQ=255)
                                         gcACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCcgg                                                                                                         >  1:366381/1‑150 (MQ=255)
                                               gCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGt                                                                                                   >  2:652858/1‑150 (MQ=255)
                                                 aCGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcg                                                                                                 >  2:471292‑M2/1‑148 (MQ=255)
                                                    cTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtg                                                                                              >  1:751243‑M2/1‑145 (MQ=255)
                                                     tGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtgg                                                                                             >  2:167934‑M2/1‑144 (MQ=255)
                                                       gCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtggcg                                                                                           <  2:171740‑M2/150‑9 (MQ=255)
                                                        ccccGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGacgccgccggcaacacctccacggccggcgacatcaccgcgccggacatcgacggtggcga                                                                                          <  1:507164‑M1/150‑62 (MQ=255)
                                                        ccccGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTg                                                                                                                                     <  2:117664/107‑1 (MQ=255)
                                                        ccccGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTg                                                                                                                                     >  1:117664/1‑107 (MQ=255)
                                                          ccGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGacgccgccggcaacacctccacggccggcgacatcaccgcgccggacatcga                                                                                                   <  2:730145‑M1/139‑53 (MQ=255)
                                                          ccGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGacgccgccggcaacacctccacggccggcgacatcaccgcgccggacatcga                                                                                                   >  1:730145‑M1/1‑87 (MQ=255)
                                                           cGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGa                                                                                       <  1:279830/150‑1 (MQ=255)
                                                             gCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGCCt                                                                                     >  1:329658/1‑150 (MQ=255)
                                                              cTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACtt                                                                                    <  1:588017/150‑1 (MQ=255)
                                                               ttCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTg                                                                                   >  2:710356/1‑150 (MQ=255)
                                                                 cgccgcGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTgta                                                                                 <  2:231112/150‑1 (MQ=255)
                                                                     gcgGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCAGGCTGGGTCGGTGGCGGTGACTTGTAGTAc                                                                             <  1:240246/150‑1 (MQ=255)
                                                                     gcgGCCAGTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTAc                                                                             <  1:97164/150‑1 (MQ=255)
                                                                          cATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCtctc                                                                        <  1:789239/150‑1 (MQ=255)
                                                                                 cTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCAc                                                                 <  1:515871/150‑1 (MQ=255)
                                                                                          ggccaggccaACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGcggcgg                                                        <  2:305291/150‑1 (MQ=255)
                                                                                             caggccaACTACCAAGTTGGTTGCGGCATCCGGTGGGGTGGTGTCGCCACAGACGATGTCCGGCGCGGTGATGTCGCCGGCGGTGGAGGTGTTGCCGGCGGTGTCGGTGGCGGTGACTTGTAGTAGCTCTCCCCTCACCTGcggcggccc                                                     >  2:147132/1‑147 (MQ=255)
                                                                                               ggccaACTACCAAGTTGGTTGCGGCATACGGTGGTGTGGTGTCGCCACTGTCGATGTCCGGCGCGGTGGTGGGTCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGa                                                   <  1:149350/150‑1 (MQ=255)
                                                                                                gccaACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAg                                                  <  1:231500/150‑1 (MQ=255)
                                                                                                gccaACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGCCGATGTCCGGTGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAg                                                  <  2:117084/150‑1 (MQ=255)
                                                                                                        ccAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGAt                                                                                                                                                  >  1:319603/1‑46 (MQ=255)
                                                                                                        ccAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGAt                                                                                                                                                  <  2:319603/46‑1 (MQ=255)
                                                                                                        ccAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGc                                          >  1:632641/1‑150 (MQ=255)
                                                                                                                 ttgCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCcggcg                                                                                                       <  2:128233/80‑1 (MQ=255)
                                                                                                                 ttgCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCcggcg                                                                                                       >  1:128233/1‑80 (MQ=255)
                                                                                                                 ttgCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGc                                 <  1:652858/150‑1 (MQ=255)
                                                                                                                        aTCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGc                          <  2:366381/150‑1 (MQ=255)
                                                                                                                           cGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTc                       <  1:171740/150‑1 (MQ=255)
                                                                                                                             gtggtgtggtGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGc                          >  2:2877/1‑145 (MQ=255)
                                                                                                                             gtggtgtggtGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGc                          <  1:2877/145‑1 (MQ=255)
                                                                                                                                gtgtggtgtCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGacca                  <  1:710356/150‑1 (MQ=255)
                                                                                                                                   tggtgtCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGAccacca               <  2:425003/150‑1 (MQ=255)
                                                                                                                                     gtgtCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAg                                                                                                                   >  1:824464/1‑48 (MQ=255)
                                                                                                                                     gtgtCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGCGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACcaca             >  1:696575/1‑150 (MQ=255)
                                                                                                                                     gtgtAGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAg                                                                                                                   <  2:824464/48‑1 (MQ=255)
                                                                                                                                        tCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtggcgacaccacaccaccggatgccgcaaccaacttggtagttggcctggccggcgcccagctcaatggccgcggcgaagccgggg          <  1:507164‑M2/150‑90 (MQ=255)
                                                                                                                                         cGCCACCGacgccgccggcaacacctccacggccggcgacatcaccgcgccggacatcgacggtggcgacaccacaccaccggatgccgcaaccaacttggtagttggcctggccggcgcccagctcaatggccgcggcgaagccggggc         <  2:171740‑M1/150‑143 (MQ=255)
                                                                                                                                          gCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTAcc        >  1:290560/1‑150 (MQ=255)
                                                                                                                                           ccACCGacgccgccggcaacacctccacggccggcgacatcaccgcgccggacatcgacggtggcgacaccacaccaccggatgccgcaaccaacttggtagttggcctggccggcgcccagctcaatggccgcggcgaagccggggcca       >  2:167934‑M1/1‑6 (MQ=255)
                                                                                                                                           ccACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTAccc       <  1:449088/150‑1 (MQ=255)
                                                                                                                                            cACCGacgccgccggcaacacctccacggccggcgacatcaccgcgccggacatcgacggtggcgacaccacaccaccggatgccgcaaccaacttggtagttggcctggccggcgcccagctcaatggccgcggcgaagccggggccag      >  1:751243‑M1/1‑5 (MQ=255)
                                                                                                                                               cGacgccgccggcaacacctccacggccggcgacatcaccgcgccggacatcgacggtggcgacaccacaccaccggatgccgcaaccaacttggtagttggcctggccggcgcccagctcaatggccgcggcgaagccggggccagcgt   >  2:471292‑M1/1‑2 (MQ=255)
                                                                                                                                                gTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCAc  >  1:256525/1‑150 (MQ=255)
                                                                                                                                                gTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGAAATACTGGCCATGCCAGTGTCGATGACCGTGACACTACCCAGCAc  >  2:224592/1‑150 (MQ=37)
                                                                                                                                                |                                                                                                                                                     
GTTGACCGAGCCGTTGGCCAGTACATTGCCCTGGGCATCGCGCACCTGCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCAC  >  NC_002947/938314‑938607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.