New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 938458	43 (1.360)	3 (0.100)	3/232	NT	7.4%	coding (7167/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 938510	35 (1.180)					coding (7115/18933 nt)	PP_0806	surface adhesion protein

GCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATCGGCGGCCAGCACACGCACGGTGCTGCCCACTTCGGCGC  >  NC_002947/938361‑938657                                                                                                                                                      |                                                                                                                                                    gCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGt                                                                                                                                                     >  2:652858/1‑150 (MQ=255)   aCGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcg                                                                                                                                                   >  2:471292‑M2/1‑148 (MQ=255)      cTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtg                                                                                                                                                >  1:751243‑M2/1‑145 (MQ=255)       tGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtgg                                                                                                                                               >  2:167934‑M2/1‑144 (MQ=255)         gCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtggcg                                                                                                                                             <  2:171740‑M2/150‑9 (MQ=255)             cGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGa                                                                                                                                         <  1:279830/150‑1 (MQ=255)               gCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGCCt                                                                                                                                       >  1:329658/1‑150 (MQ=255)                cTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACtt                                                                                                                                      <  1:588017/150‑1 (MQ=255)                 ttCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTg                                                                                                                                     >  2:710356/1‑150 (MQ=255)                   cgccgcGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTgta                                                                                                                                   <  2:231112/150‑1 (MQ=255)                       gcgGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCAGGCTGGGTCGGTGGCGGTGACTTGTAGTAc                                                                                                                               <  1:240246/150‑1 (MQ=255)                       gcgGCCAGTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTAc                                                                                                                               <  1:97164/150‑1 (MQ=255)                            cATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCtctc                                                                                                                          <  1:789239/150‑1 (MQ=255)                                   cTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCAc                                                                                                                   <  1:515871/150‑1 (MQ=255)                                            ggccaggccaACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGcggcgg                                                                                                          <  2:305291/150‑1 (MQ=255)                                               caggccaACTACCAAGTTGGTTGCGGCATCCGGTGGGGTGGTGTCGCCACAGACGATGTCCGGCGCGGTGATGTCGCCGGCGGTGGAGGTGTTGCCGGCGGTGTCGGTGGCGGTGACTTGTAGTAGCTCTCCCCTCACCTGcggcggccc                                                                                                       >  2:147132/1‑147 (MQ=255)                                                 ggccaACTACCAAGTTGGTTGCGGCATACGGTGGTGTGGTGTCGCCACTGTCGATGTCCGGCGCGGTGGTGGGTCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGa                                                                                                     <  1:149350/150‑1 (MQ=255)                                                  gccaACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAg                                                                                                    <  1:231500/150‑1 (MQ=255)                                                  gccaACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGCCGATGTCCGGTGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAg                                                                                                    <  2:117084/150‑1 (MQ=255)                                                          ccAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGc                                                                                            >  1:632641/1‑150 (MQ=255)                                                                   ttgCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGc                                                                                   <  1:652858/150‑1 (MQ=255)                                                                          aTCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGc                                                                            <  2:366381/150‑1 (MQ=255)                                                                             cGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTc                                                                         <  1:171740/150‑1 (MQ=255)                                                                               gtggtgtggtGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGc                                                                            <  1:2877/145‑1 (MQ=255)                                                                               gtggtgtggtGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGc                                                                            >  2:2877/1‑145 (MQ=255)                                                                                  gtgtggtgtCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGacca                                                                    <  1:710356/150‑1 (MQ=255)                                                                                     tggtgtCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGAccacca                                                                 <  2:425003/150‑1 (MQ=255)                                                                                       gtgtCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGCGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACcaca                                                               >  1:696575/1‑150 (MQ=255)                                                                                          tCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtggcgacaccacaccaccggatgccgcaaccaacttggtagttggcctggccggcgcccagctcaatggccgcggcgaagccgggg                                                            <  1:507164‑M2/150‑90 (MQ=255)                                                                                            gCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTAcc                                                          >  1:290560/1‑150 (MQ=255)                                                                                             ccACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTAccc                                                         <  1:449088/150‑1 (MQ=255)                                                                                                  gTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCAc                                                    >  1:256525/1‑150 (MQ=255)                                                                                                  gTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGAAATACTGGCCATGCCAGTGTCGATGACCGTGACACTACCCAGCAc                                                    >  2:224592/1‑150 (MQ=37)                                                                                                   tCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtggcgacaccacaccaccggatgccgcaaccaacttggtagttggcctggccggcgcccagctcaatggccgcggcgaagccgg                                                              <  2:730145‑M2/139‑88 (MQ=255)                                                                                                   tCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTcggtggcgacaccacaccaccggatgccgcaaccaacttggtagttggcctggccggcgcccagctcaatggccgcggcgaagccgg                                                              >  1:730145‑M2/1‑52 (MQ=255)                                                                                                      aTGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACggtg                                                >  1:17220/1‑150 (MQ=255)                                                                                                                 ggTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATcggc                                     <  2:632641/150‑1 (MQ=255)                                                                                                                             ggccgTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCa                                                                                 >  2:267633/1‑94 (MQ=255)                                                                                                                             ggccgTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCa                                                                                 <  1:267633/94‑1 (MQ=255)                                                                                                                                 gTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATCGGCGGCCAGCAcacgcacg                     <  1:342059/150‑1 (MQ=255)                                                                                                                                 gTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATCGGCGGCCAGCAcacgcacg                     <  2:696575/150‑1 (MQ=255)                                                                                                                                         gtTGCCGGCGGCGCCGGTGGCGGTGACTTGTAGTTCCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCAAGCACGGTGGTGCCATCGGCGGCCAGCACACGCACGGTGCTGcc             <  2:329658/150‑1 (MQ=255)                                                                                                                                                gcggcgTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATCGGCGGCCAGCACACGCACGGt                   >  2:206761/1‑137 (MQ=255)                                                                                                                                                gcggcgTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATCGGCGGCCAGCACACGCACGGt                   <  1:206761/137‑1 (MQ=255)                                                                                                                                                    cgTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATCGGCGGCCAGCACACGCACGGTGCTGCCCACTTCGgcgc  <  2:17220/150‑1 (MQ=255)                                                                                                                                                     gTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATcg                                       >  2:620096/1‑112 (MQ=255)                                                                                                                                                     gTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATcg                                       <  1:620096/112‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GCACGCTGGCCCCGGCTTCGCCGCGGCCATTGAGCTGGGCGCCGGCCAGGCCAACTACCAAGTTGGTTGCGGCATCCGGTGGTGTGGTGTCGCCACCGTCGATGTCCGGCGCGGTGATGTCGCCGGCCGTGGAGGTGTTGCCGGCGGCGTCGGTGGCGGTGACTTGTAGTACCTCTCCACTCACCTGCGGCGGGTCGAGGGTGATGCTGAAACTGCCAGTGGCGTCGACCACCACACTACCCAGCACGGTGGTGCCATCGGCGGCCAGCACACGCACGGTGCTGCCCACTTCGGCGC  >  NC_002947/938361‑938657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.