New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1138550 | 34 (1.070) | 5 (0.180) | 5/220 | NT | 12.6% | intergenic (‑75/+90) | arcC/arcB | carbamate kinase/ornithine carbamoyltransferase |
? | NC_002947 | = 1138611 | 39 (1.390) | intergenic (‑136/+29) | arcC/arcB | carbamate kinase/ornithine carbamoyltransferase |
GCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGC > NC_002947/1138401‑1138699 | gcgcTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGC > 2:418039‑M1/1‑150 (MQ=255) tGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCAtac > 1:20874/1‑148 (MQ=255) aGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAag > 1:804643/1‑150 (MQ=255) gCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGGATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAaga > 1:774088/1‑150 (MQ=255) aTGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGGGGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGcccg > 1:733635/1‑148 (MQ=255) ggCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGAcc > 2:256575/1‑150 (MQ=255) cgaAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCga < 2:86319/150‑1 (MQ=255) cgaAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCga < 2:539974/150‑1 (MQ=255) aGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGc > 1:87583/1‑150 (MQ=255) ggCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCgg < 1:418986/150‑1 (MQ=255) ggCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCCCTGTGGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggt > 2:479349‑M1/1‑108 (MQ=255) tGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGGATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGAc < 2:774088/150‑1 (MQ=255) gccgccCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACg > 1:818900/1‑150 (MQ=255) ccgccCAATTCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAACTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGc < 1:274122/150‑1 (MQ=255) gccCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCt > 1:352828/1‑150 (MQ=255) gccCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCt > 2:191788/1‑150 (MQ=255) tGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgg > 1:370446‑M1/1‑93 (MQ=255) tGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCgg < 1:256575/150‑1 (MQ=255) gCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcggg < 1:97388‑M1/150‑59 (MQ=255) gCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCggg < 1:191788/150‑1 (MQ=255) acaacGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCCGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCAc > 1:586022/1‑150 (MQ=255) aacGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgc < 2:370446‑M1/150‑64 (MQ=255) acGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCCCTGTGGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgcc < 1:479349‑M1/150‑65 (MQ=255) gCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGGCTTCGCGGGCACgcccgctccc < 1:282658‑M2/150‑11 (MQ=255) gCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCAAGGACGCTGCGGAGTTCGCTGTGGGAGCGGGCATGGCCGCGAAGAGGCCAGACCTGACATCAACGATGATGCGGCTCACGCCTTAGCGGGCACgcccgctccc < 1:75359‑M2/150‑11 (MQ=255) aTGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACgcc < 1:484994‑M2/141‑4 (MQ=255) aTGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACgcc > 2:484994‑M2/1‑138 (MQ=255) tgtgGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACgcccgctcccaca < 2:387242‑M2/150‑14 (MQ=255) tgtgGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACgcccgctcccaca < 2:683164‑M2/150‑14 (MQ=255) tgtgGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACgcccgctcccaca > 1:387242‑M2/1‑137 (MQ=255) gtgGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACgcccgctcccacag > 2:804643‑M2/1‑136 (MQ=255) aaTGTCCTTTAGCGAAAGAATGAATGGACTGTCGATCCAAGGAAGCTCCGGAGTTAACTGTGGGAGCGGGCAGGCCCGGGAAGAGGCGAGACCGTACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGAc > 2:97639/1‑150 (MQ=255) ccTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCgg > 2:388686/1‑150 (MQ=255) cTTTAGCGAAAGAATGAATGGAATGTCGCTGCACGGCAGCTGCGGAGGTCGCTGTGGGAGCGGGCATGCACGAGAAAAGGCCAGACCCGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGACCGCTCCCACAGGGACTACggg > 2:31476/1‑150 (MQ=255) aaaGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTtat > 1:175961/1‑150 (MQ=255) aGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAg > 2:16809/1‑150 (MQ=255) tgaatgGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCa > 1:849624/1‑150 (MQ=255) tgaatgGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCa < 2:623586/150‑1 (MQ=255) aatgGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGc > 1:320907/1‑150 (MQ=255) atgGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGcc > 2:647740/1‑150 (MQ=255) ggACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCCGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCat < 2:586022/150‑2 (MQ=255) gACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAgg < 1:683164/150‑1 (MQ=255) tGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTc < 2:240898/150‑1 (MQ=255) tGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCtt < 2:87583/150‑1 (MQ=255) tGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCtt < 2:818900/150‑1 (MQ=255) tgcGCTGGGGGGGCGGGCATGCCCGCGAAGAGGCCAGACCTGAAATCATCGATGATGCGGCTGACGCCTTAGCGGGCACGCCCGCTCTCACAGGGACTGCGTGCCACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCgtg < 2:75359/148‑1 (MQ=255) cTGTGGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgcccgctcccacagcgaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccac > 2:804643‑M1/1‑14 (MQ=255) tgtgGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgcccgctcccacagcgaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccaca < 2:387242‑M1/150‑138 (MQ=255) tgtgGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgcccgctcccacagcgaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccaca < 2:683164‑M1/150‑138 (MQ=255) tgtgGGAGCGGGCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgcccgctcccacagcgaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccaca > 1:387242‑M1/1‑13 (MQ=255) tgGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGTGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGc > 2:359647/1‑150 (MQ=255) gggAGCGGGCgtgcccgctaaggcgtgagccgcatcatcgttgatgtcaggtctggcctcttcgcggccatgcccgctcccacagcgaactccgcagcgtccttgcagcgacagtccattcattctttcgctaaaggacattccacatgc < 1:75359‑M1/150‑141 (MQ=255) gggAGCGGGCgtgcccgcgaagccgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgcccgctcccacagcgaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccacatgc < 1:282658‑M1/150‑141 (MQ=255) ggAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCgg < 1:388686/150‑1 (MQ=255) gAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGt < 2:489210/150‑1 (MQ=255) ggCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgcccgctcccacagcgaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccacat > 2:484994‑M1/1‑3 (MQ=255) ggCgtgcccgcgaaggcgtcagccgcatcatcgatgatgtcaggtctggcctcttcgcgggcatgcccgctcccacagcgaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccacat < 1:484994‑M1/141‑139 (MQ=255) ggCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACgcccgctcccacagggaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccacatgcgtatcgt < 1:479349‑M2/150‑87 (MQ=255) ggCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTcc > 1:799726/1‑150 (MQ=255) gCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACgcccgctcccacagcgaactccgcagcttccgtgcagcgacagtccattcattctttcgctaaaggacattccacatgcgtatcgtt < 2:370446‑M2/150‑88 (MQ=255) cATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGc < 2:175961/150‑1 (MQ=255) | GCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGC > NC_002947/1138401‑1138699 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |