New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1352457 =	18 (0.570)	4 (0.130)	3/234	NT	16.0%	intergenic (‑94/+46)	PP_1178/nrdA	hypothetical protein/ribonucleoside‑diphosphate reductase subunit alpha
	?	NC_002947	1352497 =	25 (0.840)					intergenic (‑134/+6)	PP_1178/nrdA	hypothetical protein/ribonucleoside‑diphosphate reductase subunit alpha

CGGTTTCTGCGTTGCGACCAATCTTGCGAGATGCCAGTTTTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAA  >  NC_002947/1352312‑1352603                                                                                                                                                  |                                                                                                                                                   cgagaagtcgaccatcaacaccggcaagctcaacgccgtttccagcggtggcgacagcgccccagtccaggcagccggccctgcgccagtgccaaaggcctgcgcgatcgacgagcctgactgcgaagcctgccagtaaggcctgAATGc                                                                                                                                                <  1:522029‑M1/5‑1 (MQ=255) cGGTTTCTGCGTTGCGACCAATCTTGCGAGATGCCAGTTTTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGc                                                                                                                                                >  1:558944/1‑150 (MQ=255)        tGCGTTGCGACCAATCTTGCGAGATGCCAGTTTTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCgg                                                                                                                                         >  2:294965/1‑150 (MQ=255)          cGTTGCGACCAATCTTGCGAGATGCCAGTTTTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCgggg                                                                                                                                       <  2:346146/150‑1 (MQ=255)                   cAATCTTGCGAGATGCCAGTTTTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAg                                                                                                                              >  1:773894/1‑150 (MQ=255)                          gctagaTGCCAGTTGTTTCCGGGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCAcccc                                                                                                                       <  2:350194/147‑1 (MQ=255)                              gaTGCCAGTTTTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCAc                                                                                                                   <  2:558944/150‑1 (MQ=255)                               caacgccgtttccagcggtggcgacagcgccccagtccaggcagccggccctgcgccagtgccaaaggcctgcgcgatcgacgagcctgactgcgaagcctgccagtaaggcctaAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACg                                                                                                                  >  1:553670‑M1/116‑150 (MQ=255)                                        ttccagcggtggcgacagcgccccagtccaggcagccggccctgcgccagtgccaaaggcctgcgcgatcgacgagcctgactgcgaagcctgccagtaaggcctgAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAgg                                                                                                         >  1:831564‑M1/107‑150 (MQ=255)                                                              tCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGt                                                                                   >  2:759430/1‑150 (MQ=255)                                                                 ttttttGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAg                                                                                >  1:494243/1‑150 (MQ=255)                                                                   ttttGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGc                                                                              <  1:294965/150‑1 (MQ=255)                                                                       gagaGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCtcgt                                                                          >  2:522029/1‑150 (MQ=255)                                                                             tCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATcg                                                                    >  1:236011/1‑150 (MQ=255)                                                                                  ttCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAg                                                               <  2:603927/150‑1 (MQ=255)                                                                                     ttttACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCGCGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGcc                                                            >  1:126291/1‑150 (MQ=255)                                                                                     ttttACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTATTAGCAGCCTTCGCACTCACCCCCGCCGATGCCGCAGGcc                                                            >  2:96715/1‑150 (MQ=255)                                                                                       cagtgccaaaggcctgcgcgatcgacgagcctgactgcgaagcctgccagtaaggcctgAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACg                                                                                                                  >  2:97225‑M1/60‑94 (MQ=255)                                                                                       cagtgccaaaggcctgcgcgatcgacgagcctgactgcgaagcctgccagtaaggcctgAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACg                                                                                                                  <  1:97225‑M1/35‑1 (MQ=255)                                                                                                         aGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGcc                                        <  1:759430/150‑1 (MQ=255)                                                                                                                aaaGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCATTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGACTTTGGCACTGGCGCAGGGCCGGCTGcc                                 >  1:786398/1‑150 (MQ=255)                                                                                                                               tctGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCttt                                                         <  1:844858/111‑1 (MQ=255)                                                                                                                               tctGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCttt                                                         >  2:844858/1‑111 (MQ=255)                                                                                                                               tctGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTg                  >  1:698915/1‑150 (MQ=255)                                                                                                                                               aaaaaTGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCTGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGaaa  <  2:494243/150‑1 (MQ=255)                                                                                                                                               aaaaaTGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGaaa  >  2:529278/1‑150 (MQ=255)                                                                                                                                                 aaaTGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTg                               >  2:290843/1‑119 (MQ=255)                                                                                                                                                 aaaTGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTg                               <  1:290843/119‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CGGTTTCTGCGTTGCGACCAATCTTGCGAGATGCCAGTTTTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAA  >  NC_002947/1352312‑1352603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.