New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1352457 =	18 (0.570)	4 (0.130)	3/234	NT	16.0%	intergenic (‑94/+46)	PP_1178/nrdA	hypothetical protein/ribonucleoside‑diphosphate reductase subunit alpha
	?	NC_002947	1352497 =	25 (0.840)					intergenic (‑134/+6)	PP_1178/nrdA	hypothetical protein/ribonucleoside‑diphosphate reductase subunit alpha

TTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGATGGTCGACTTCTCG  >  NC_002947/1352351‑1352641                                                                                                                                                   |                                                                                                                                                 ttccagcggtggcgacagcgccccagtccaggcagccggccctgcgccagtgccaaaggcctgcgcgatcgacgagcctgactgcgaagcctgccagtaaggcctgAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAgg                                                                                                                                               >  1:831564‑M1/107‑150 (MQ=255)                       tCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGt                                                                                                                         >  2:759430/1‑150 (MQ=255)                          ttttttGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAg                                                                                                                      >  1:494243/1‑150 (MQ=255)                            ttttGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGc                                                                                                                    <  1:294965/150‑1 (MQ=255)                                gagaGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCtcgt                                                                                                                >  2:522029/1‑150 (MQ=255)                                      tCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATcg                                                                                                          >  1:236011/1‑150 (MQ=255)                                           ttCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAg                                                                                                     <  2:603927/150‑1 (MQ=255)                                              ttttACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCGCGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGcc                                                                                                  >  1:126291/1‑150 (MQ=255)                                              ttttACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTATTAGCAGCCTTCGCACTCACCCCCGCCGATGCCGCAGGcc                                                                                                  >  2:96715/1‑150 (MQ=255)                                                                  aGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGcc                                                                              <  1:759430/150‑1 (MQ=255)                                                                         aaaGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCATTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGACTTTGGCACTGGCGCAGGGCCGGCTGcc                                                                       >  1:786398/1‑150 (MQ=255)                                                                                        tctGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCttt                                                                                               >  2:844858/1‑111 (MQ=255)                                                                                        tctGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCttt                                                                                               <  1:844858/111‑1 (MQ=255)                                                                                        tctGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTg                                                        >  1:698915/1‑150 (MQ=255)                                                                                                       cctgaatgccgtgcggggtgcctacgggtgccccgcgcggcattCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGaa                                         >  1:831564‑M2/45‑150 (MQ=255)                                                                                                        aaaaaTGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCTGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGaaa                                        <  2:494243/150‑1 (MQ=255)                                                                                                        aaaaaTGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGaaa                                        >  2:529278/1‑150 (MQ=255)                                                                                                          aaaTGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTg                                                                     <  1:290843/119‑1 (MQ=255)                                                                                                          aaaTGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTg                                                                     >  2:290843/1‑119 (MQ=255)                                                                                                               CCGCGCGGGGCACCCGTAGGCACCCCGCGCGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGtt                                 >  2:126291‑M1/1‑150 (MQ=255)                                                                                                                cgtgcggggtgcctacgggtgccccgcgcggcattTAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTg                                >  1:553670‑M2/36‑150 (MQ=255)                                                                                                                cgtgcggggtgcctacgggtgccccgcgcggcattCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTg                                                                                        >  2:97225‑M2/36‑94 (MQ=255)                                                                                                                cgtgcggggtgcctacgggtgccccgcgcggcattCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTg                                                                                        <  1:97225‑M2/59‑1 (MQ=255)                                                                                                                       ggCACCCGTAGGCACCCCGCACGGCATTCACGCCTTACTGGAAGGCTTCGCAGTCAGGCTCGTCGATCGCGCACACCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGc                         <  1:696652/150‑1 (MQ=255)                                                                                                                               tAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCGTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTAGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTg                 >  1:682571/1‑150 (MQ=255)                                                                                                                                 ggCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGAt               <  2:236011/150‑1 (MQ=255)                                                                                                                                  gCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGATg              >  1:600880/1‑150 (MQ=255)                                                                                                                                    aCCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGATGGt            >  1:46877/1‑150 (MQ=255)                                                                                                                                     ccccGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGc                         >  2:164405/1‑136 (MQ=255)                                                                                                                                     ccccGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGc                         <  1:164405/136‑1 (MQ=255)                                                                                                                                      cccGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGATGGTCg          >  1:633985/1‑150 (MQ=255)                                                                                                                                       ccGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGATGGTCGa         >  1:398514/1‑150 (MQ=255)                                                                                                                                          cACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGATGGTCGACtt      >  2:517759/1‑150 (MQ=255)                                                                                                                                              gcattCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGATGGTCGACTTCTCg  <  1:522029‑M2/145‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TTTTCCGCGCCATGGGCGTACATCCTTTTTTGAGAGGTCCTGTTCTTTTACCGAGCTGCGTGAACAGTGGGCAAAGGGCAAGGTTTCTCTGAGGCGCGGATACAAAAATGCCGCGCGGGGCACCCGTAGGCACCCCGCACGGCATTCAGGCCTTACTGGCAGGCTTCGCAGTCAGGCTCGTCGATCGCGCAGGCCTTTGGCACTGGCGCAGGGCCGGCTGCCTGGACTGGGGCGCTGTCGCCACCGCTGGAAACGGCGTTGAGCTTGCCGGTGTTGATGGTCGACTTCTCG  >  NC_002947/1352351‑1352641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.