New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1377535 =	39 (1.230)	4 (0.130)	4/236	NT	10.0%	coding (104/1293 nt)	PP_1201	hypothetical protein
	?	NC_002947	1377557 =	35 (1.160)					coding (82/1293 nt)	PP_1201	hypothetical protein

GGCTTCACCGGCCTGGCTCAGGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGGGCGG  >  NC_002947/1377390‑1377681                                                                                                                                                  |                                                                                                                                                    ggCTTCACCGGCCTGGCTCAGGTCGAGCAGTTGCTTGCCAGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGgcgcgc                                                                                                                                                 >  1:617693/1‑150 (MQ=255)  gtggcactggccgacaccgccgccctgattgcaggcggcctgactggattggtgaaacgctgatgacccgacgctttttgttgtacctgctggttcccctgctgctggccgccctgggtggtgcgctggccttctggctgtggaCGCGcc                                                                                                                                                <  1:55541‑M1/6‑1 (MQ=255)       aCCGGCCTGGCTCAGGTCGCGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCggg                                                                                                                                           <  2:562948/150‑1 (MQ=255)             cTGGCTCAGGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCg‑g                                                                                                                                    <  1:190660/150‑1 (MQ=255)                     ggTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTcc                                                                                                                            >  2:204717/1‑150 (MQ=255)                       tCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCcac                                                                                                                          >  1:252633/1‑150 (MQ=255)                       tCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCcac                                                                                                                          <  1:452769/150‑1 (MQ=255)                       tCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCcac                                                                                                                          <  2:381975/150‑1 (MQ=255)                          aGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGc                                                                                                                       <  1:204717/150‑1 (MQ=255)                              gTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGa                                                                                                                   >  1:545657/1‑150 (MQ=255)                                 gcttgcCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAgg                                                                                                                >  1:447220/1‑150 (MQ=255)                                  cttgcCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGc                                                                                                               >  2:723652/1‑150 (MQ=255)                                        cGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAgcgc                                                                                                         >  1:847588/1‑150 (MQ=255)                                        cGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAgcgc                                                                                                         >  2:384481/1‑150 (MQ=255)                                            aGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGcacca                                                                                                     <  2:447220/150‑1 (MQ=255)                                                 cTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAg                                                                                                >  1:296816/1‑150 (MQ=255)                                                         gtgGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGCTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCca                                                                                        <  2:616678/150‑1 (MQ=255)                                                              aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCgg                                                                                                                                            >  2:481818/1‑94 (MQ=255)                                                              aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCgg                                                                                                                                            <  1:481818/94‑1 (MQ=255)                                                              aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGc                                                                                                                       >  1:602335/1‑114 (MQ=255)                                                              aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGc                                                                                                                       <  2:602335/114‑1 (MQ=255)                                                              aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCcagcagc                                                                                   >  2:816198/1‑150 (MQ=255)                                                              aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCcagcagc                                                                                   >  1:226827/1‑150 (MQ=255)                                                                 ccGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCCGCAGCAgg                                                                                <  2:296816/150‑1 (MQ=255)                                                                        ccACACGGGCATTGGCGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGGTGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCTGCCAGCAGCAGGGGAACca                                                                         >  2:480631/1‑150 (MQ=255)                                                                                        gTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACaaaaa                                                         >  2:632470/1‑150 (MQ=255)                                                                                        gTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACaaaaa                                                         >  1:522691/1‑150 (MQ=255)                                                                                        gTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACaaaaa                                                         <  1:723652/150‑1 (MQ=255)                                                                                              gCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCg                                                   >  2:55541/1‑150 (MQ=255)                                                                                               ccAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCgg                                                  <  1:816198/150‑1 (MQ=255)                                                                                                      aaaCACGGGTGATGCTGGTGTCTGTGGTGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGAGCGGTGGTTACCAGAAGGCCAGCGCACCACCCAGGGCTGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGtcatca                                           <  1:480631/149‑1 (MQ=255)                                                                                                          acGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGt                                       >  2:248926/1‑150 (MQ=255)                                                                                                              gTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCa                                   <  2:617693/150‑1 (MQ=255)                                                                                                                      ggTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCa                           <  2:522691/150‑1 (MQ=255)                                                                                                                             ttGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGgc                    >  1:648472/1‑150 (MQ=255)                                                                                                                                tggccttctggctgtggaCGCGCCTCGGGGGCCg‑gg                                                                                                                                   <  1:732724‑M1/18‑1 (MQ=255)                                                                                                                                tggccttctggctgtggaCGCGCCTCGGGGGCCg‑gg                                                                                                                                   >  2:732724‑M1/19‑36 (MQ=255)                                                                                                                                   cTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTg              >  2:101488/1‑150 (MQ=255)                                                                                                                                     ttctggctgtggaCGCGCC‑CGGCCCCCGAGGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGtcatc                                            >  1:696970‑M1/14‑118 (MQ=255)                                                                                                                                     ttctggctgtggaCGCGCC‑CGGCCCCCGAGGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGtcatc                                            <  2:696970‑M1/105‑1 (MQ=255)                                                                                                                                      aaCTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATc                             <  2:679168/132‑1 (MQ=255)                                                                                                                                      aaCTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATc                             >  1:679168/1‑132 (MQ=255)                                                                                                                                         tGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCa        <  1:596304/150‑1 (MQ=255)                                                                                                                                          gTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAgg                                                                                <  1:702626/77‑1 (MQ=255)                                                                                                                                          gTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAgg                                                                                >  2:702626/1‑77 (MQ=255)                                                                                                                                               aGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGggcgg  <  1:763249/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GGCTTCACCGGCCTGGCTCAGGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGGGCGG  >  NC_002947/1377390‑1377681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.