New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1377535 =	39 (1.230)	4 (0.130)	4/236	NT	10.0%	coding (104/1293 nt)	PP_1201	hypothetical protein
	?	NC_002947	1377557 =	35 (1.160)					coding (82/1293 nt)	PP_1201	hypothetical protein

GGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGGGCGGCGGTGTCGGCCAGTGCCAC  >  NC_002947/1377410‑1377700                                                                                                                                                     |                                                                                                                                                ggTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTcc                                                                                                                                               >  2:204717/1‑150 (MQ=255)   tCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCcac                                                                                                                                             >  1:252633/1‑150 (MQ=255)   tCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCcac                                                                                                                                             <  1:452769/150‑1 (MQ=255)   tCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCcac                                                                                                                                             <  2:381975/150‑1 (MQ=255)      aGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGc                                                                                                                                          <  1:204717/150‑1 (MQ=255)          gTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGa                                                                                                                                      >  1:545657/1‑150 (MQ=255)             gcttgcCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAgg                                                                                                                                   >  1:447220/1‑150 (MQ=255)              cttgcCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGc                                                                                                                                  >  2:723652/1‑150 (MQ=255)                    cGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAgcgc                                                                                                                            >  2:384481/1‑150 (MQ=255)                    cGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAgcgc                                                                                                                            >  1:847588/1‑150 (MQ=255)                        aGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGcacca                                                                                                                        <  2:447220/150‑1 (MQ=255)                             cTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAg                                                                                                                   >  1:296816/1‑150 (MQ=255)                                     gtgGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGCTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCca                                                                                                           <  2:616678/150‑1 (MQ=255)                                          aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGc                                                                                                                                          <  2:602335/114‑1 (MQ=255)                                          aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGc                                                                                                                                          >  1:602335/1‑114 (MQ=255)                                          aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCcagcagc                                                                                                      >  2:816198/1‑150 (MQ=255)                                          aCGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCcagcagc                                                                                                      >  1:226827/1‑150 (MQ=255)                                            gatgacccgacgctttttgttgtacctgctggttcccctgctgctggccgccctgggtggtgcgctggccttctggctgtggacgcgcctcgggggccgggcgcgTCCACAGCCAGaa                                                                                                                                     >  1:696970‑M2/106‑118 (MQ=255)                                            gatgacccgacgctttttgttgtacctgctggttcccctgctgctggccgccctgggtggtgcgctggccttctggctgtggacgcgcctcgggggccgggcgcgTCCACAGCCAGaa                                                                                                                                     <  2:696970‑M2/13‑1 (MQ=255)                                             ccGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCCGCAGCAgg                                                                                                   <  2:296816/150‑1 (MQ=255)                                                    ccACACGGGCATTGGCGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGGTGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCTGCCAGCAGCAGGGGAACca                                                                                            >  2:480631/1‑150 (MQ=255)                                                                    gTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACaaaaa                                                                            >  2:632470/1‑150 (MQ=255)                                                                    gTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACaaaaa                                                                            >  1:522691/1‑150 (MQ=255)                                                                    gTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACaaaaa                                                                            <  1:723652/150‑1 (MQ=255)                                                                          gCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCg                                                                      >  2:55541/1‑150 (MQ=255)                                                                           ccAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCgg                                                                     <  1:816198/150‑1 (MQ=255)                                                                                  aaaCACGGGTGATGCTGGTGTCTGTGGTGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGAGCGGTGGTTACCAGAAGGCCAGCGCACCACCCAGGGCTGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGtcatca                                                              <  1:480631/149‑1 (MQ=255)                                                                                      acGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGt                                                          >  2:248926/1‑150 (MQ=255)                                                                                          gTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCa                                                      <  2:617693/150‑1 (MQ=255)                                                                                                  ggTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCa                                              <  2:522691/150‑1 (MQ=255)                                                                                                         ttGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGgc                                       >  1:648472/1‑150 (MQ=255)                                                                                                               cTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTg                                 >  2:101488/1‑150 (MQ=255)                                                                                                                 ttctggctgtggaCGCGCC‑CGGCCCCCGAGGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGtcatc                                                               >  1:696970‑M1/14‑118 (MQ=255)                                                                                                                 ttctggctgtggaCGCGCC‑CGGCCCCCGAGGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGtcatc                                                               <  2:696970‑M1/105‑1 (MQ=255)                                                                                                                  aaCTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATc                                                <  2:679168/132‑1 (MQ=255)                                                                                                                  aaCTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATc                                                >  1:679168/1‑132 (MQ=255)                                                                                                                     tGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCa                           <  1:596304/150‑1 (MQ=255)                                                                                                                      gTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAgg                                                                                                   <  1:702626/77‑1 (MQ=255)                                                                                                                      gTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAgg                                                                                                   >  2:702626/1‑77 (MQ=255)                                                                                                                           aGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGggcgg                     <  1:763249/150‑1 (MQ=255)                                                                                                                                  CCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGGGCGGCGGTGTc              <  1:171382‑M1/150‑1 (MQ=255)                                                                                                                                   cccggcccccgaggcgcgTCCACAGCCAGAAGGCCa                                                                                                                                >  2:732724‑M2/19‑36 (MQ=255)                                                                                                                                   cccggcccccgaggcgcgTCCACAGCCAGAAGGCCa                                                                                                                                <  1:732724‑M2/18‑1 (MQ=255)                                                                                                                                    tCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTc                                                                       <  1:382985/91‑1 (MQ=255)                                                                                                                                    tCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTc                                                                       >  2:382985/1‑91 (MQ=255)                                                                                                                                     cGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGGGCGGCGGTGTCGGc           <  2:252633/150‑1 (MQ=255)                                                                                                                                            cG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGGGCGGCGGTGTCGGCCAGTGcc    >  2:318808/1‑150 (MQ=255)                                                                                                                                               ggcgcgTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGGGCGGCGGTGTCGGCCAGTGccac  <  1:55541‑M2/144‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                GGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGTCCACAGCCAGAAGGCCAGCGCACCACCCAGGGCGGCCAGCAGCAGGGGAACCAGCAGGTACAACAAAAAGCGTCGGGTCATCAGCGTTTCACCAATCCAGTCAGGCCGCCTGCAATCAGGGCGGCGGTGTCGGCCAGTGCCAC  >  NC_002947/1377410‑1377700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.