New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1431552	33 (1.040)	5 (0.170)	5/234	NT	13.7%	coding (327/336 nt)	PP_1253	ArsR family transcriptional regulator
	?	NC_002947	= 1431565	32 (1.070)					coding (314/336 nt)	PP_1253	ArsR family transcriptional regulator

GGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGC  >  NC_002947/1431404‑1431699                                                                                                                                                     |                                                                                                                                                    ggAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACGGGTATCACTGCTGGa                                                                                                                                                    >  2:594731‑M1/1‑149 (MQ=255)           gCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCa                                                                                                                                          >  1:600038/1‑150 (MQ=255)                    tgtgAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGagtgcatcctgcgccagcag                                                                                                                                 <  1:594731‑M1/150‑21 (MQ=255)                      tgAGAGGACGGCGGGTGTGAATCCGCCTGCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGcc                                                                                                                               >  1:794717/1‑150 (MQ=255)                          agGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCggg                                                                                                                           <  2:600038/150‑1 (MQ=255)                              cggcggGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCTGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAAc                                                                                                                       <  2:204302/150‑1 (MQ=255)                                    gtgtGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCg                                                                                                                 >  1:80814/1‑150 (MQ=255)                                           tCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCa                                                                                                          >  2:430608/1‑150 (MQ=255)                                              gCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCAtct                                                                                                       <  2:344906/150‑1 (MQ=255)                                                      cTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGc                                                                                               >  1:802788/1‑150 (MQ=255)                                                         gATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGc                                                                                            >  2:837324/1‑150 (MQ=255)                                                         gATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGc                                                                                            >  2:781591/1‑150 (MQ=255)                                                            tGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGaa                                                                                         <  1:430608/150‑1 (MQ=255)                                                              ccAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAAtt                                                                                       >  1:559991/1‑150 (MQ=255)                                                              ccAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAAtt                                                                                       >  1:175849/1‑150 (MQ=255)                                                               cAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCg                                                                                           <  2:685891/145‑1 (MQ=255)                                                               cAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCg                                                                                           >  1:685891/1‑145 (MQ=255)                                                                           aaCCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGccc                                                                                                                              <  2:578148/98‑1 (MQ=255)                                                                           aaCCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGccc                                                                                                                              >  1:578148/1‑98 (MQ=255)                                                                                   ggCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACAtt                                                                  <  1:837324/150‑1 (MQ=255)                                                                                            ccttCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTg                                                         >  2:427292/4‑150 (MQ=255)                                                                                            ccATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTg                                                         >  1:681838/1‑150 (MQ=255)                                                                                             cATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGc                                                        <  2:802788/150‑1 (MQ=255)                                                                                             cATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGc                                                        <  1:678181/150‑1 (MQ=255)                                                                                               tCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGagtgcatcctgcgccagcagtga                                                                                                                              <  1:615273‑M1/78‑24 (MQ=255)                                                                                               tCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGagtgcatcctgcgccagcagtga                                                                                                                              >  2:615273‑M1/1‑55 (MQ=255)                                                                                                               gTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGc                                      <  2:681838/150‑1 (MQ=255)                                                                                                                ttCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGagtgcatcctgctccagcagtgatacc                                                                                                                          <  2:567693‑M1/65‑28 (MQ=255)                                                                                                                ttCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGagtgcatcctgcgccagcagtgatacc                                                                                                                          >  1:567693‑M1/1‑38 (MQ=255)                                                                                                                ttCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCCGCCCTGCATCACGCa                                     >  1:316108/1‑150 (MQ=255)                                                                                                                ttCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCa                                     >  2:99227/1‑150 (MQ=255)                                                                                                                               gCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAgtggt                      >  2:128138/1‑150 (MQ=255)                                                                                                                                 cTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATc                                          <  1:57106/128‑1 (MQ=255)                                                                                                                                 cTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATc                                          >  2:57106/1‑128 (MQ=255)                                                                                                                                 cTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGtggtgg                    <  1:99227/150‑1 (MQ=255)                                                                                                                                 cTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGtggtgg                    >  1:114973/1‑150 (MQ=255)                                                                                                                                      caGGTATCACTGCTGGCGCAGGATGAACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACAt               >  2:481015/1‑150 (MQ=255)                                                                                                                                        ggTATCACTGCTGGCGCAGGATGCACTccagcagtgatacctgtgcaggcctcttcgcgggtgaa                                                                                                  >  1:567693‑M2/1‑27 (MQ=255)                                                                                                                                        ggTATCACTGCTGGAGCAGGATGCACTccagcagtgatacctgtgcaggcctcttcgcgggtgaa                                                                                                  <  2:567693‑M2/65‑39 (MQ=255)                                                                                                                                           aTCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCg          <  2:794717/150‑1 (MQ=255)                                                                                                                                            tCACTGCTGGCGCAGGATGCACTccagcagtgatacctgtgcaggcctcttcgcgggtgaacccgctcctaccaggga                                                                                 >  2:615273‑M2/1‑23 (MQ=255)                                                                                                                                            tCACTGCTGGCGCAGGATGCACTccagcagtgatacctgtgcaggcctcttcgcgggtgaacccgctcctaccaggga                                                                                 <  1:615273‑M2/78‑56 (MQ=255)                                                                                                                                            tCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACACAACACACGGAAGTGGTGGGACATGCTCGa         >  2:591353/1‑150 (MQ=255)                                                                                                                                               ctgctgGCGCAGGATGCACTccagcagtgatacctgtgcaggcctcttcgcgggtgaacccgctcctaccagggatggcgataagcctgagggttgcgctgggcttggcaatcgagtaggaggcggattcacacccgccgtcctctcaca      <  1:594731‑M2/150‑131 (MQ=255)                                                                                                                                                   tgGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGc  <  1:128138/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCCAAGCCCAGCGCAACCCTCAGGCTTATCGCCATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCTGCACAGGTATCACTGCTGGCGCAGGATGCACTCCAGCAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGC  >  NC_002947/1431404‑1431699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.