New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1781623	35 (1.110)	3 (0.100)	3/240	NT	8.7%	coding (2496/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	= 1781656	29 (0.950)					coding (2463/2703 nt)	glnD	uridylyltransferase

CAGGCGGCTGCACAGCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCGG  >  NC_002947/1781488‑1781769                                                                                                                                           |                                                                                                                                                   cAGGCGGCTGCACAGCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCcag                                                                                                                                      <  2:348437/150‑1 (MQ=255) cAGGCGGCTGCACAGCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCcag                                                                                                                                      <  1:55646/150‑1 (MQ=255)   ggcggcTGCACAGCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCcagca                                                                                                                                    >  2:581253/1‑150 (MQ=255)    gcggcTGCACAGCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCcagcag                                                                                                                                   >  2:58769/1‑150 (MQ=255)      ggcTGCACAGCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGcctgctggc                                                                                                                                 >  2:325114/1‑143 (MQ=255)              aGCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCTGCTGGCCCggctgg                                                                                                                         <  1:325114/150‑5 (MQ=255)               gCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGt                                                                                                                        >  2:192633/1‑150 (MQ=255)               gCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGt                                                                                                                        >  2:19162/1‑150 (MQ=255)                cTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTc                                                                                                                       >  1:579906/1‑150 (MQ=255)                     ggTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGcc                                                                                                                                <  1:568969/136‑1 (MQ=255)                     ggTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGcc                                                                                                                                >  2:568969/1‑136 (MQ=255)                      gTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGCACACG‑TCTGGACT‑‑CAGGTCGAACTCCAGGAAGATCCGCACTTGGCGCCTCAGCAGTCCCGTGCGGTCTGgcgc                                                                                                                 >  1:233003/1‑150 (MQ=255)                          gACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCCTGATGTG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCgccagaccgcccgggcctgctggcccggctggggcggat                                                                                                             <  1:480680‑M1/150‑40 (MQ=255)                                ggCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCgccagaccgcccgggcctgctggcccggctggggcggatc                                                                                                            <  1:345446‑M1/145‑41 (MQ=255)                                ggCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCgccagaccgcccgggcctgctggcccggctggggcggatc                                                                                                            >  2:345446‑M1/1‑105 (MQ=255)                                 gCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGa                                                                                                      <  1:432582/150‑1 (MQ=255)                                 gCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGa                                                                                                      <  2:301938/150‑1 (MQ=255)                                 gCTGGTTGGCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGACCCAGCCGGACCAGCATGCCCGGGCGGTGTGGCGCGGTGATTTCgg                                                                                                      >  2:661351/1‑149 (MQ=255)                                     gTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGCTCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGAt                                                                                                  <  2:103443/150‑1 (MQ=255)                                                         agaaCACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCAt                                                                              <  1:739809/150‑1 (MQ=255)                                                                gTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGat                                                                       >  1:13115/1‑149 (MQ=255)                                                                gTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAg                                                                       <  1:58769/150‑1 (MQ=255)                                                                   ttctACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGAt                                                                    <  2:579906/150‑1 (MQ=255)                                                                    tctACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATg                                                                   <  1:581253/150‑1 (MQ=255)                                                                      tACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGt                                                                 >  1:163554/1‑150 (MQ=255)                                                                         ccGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCAc                                                              >  2:395217/1‑150 (MQ=255)                                                                         ccGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCAc                                                              >  2:661555/1‑150 (MQ=255)                                                                                 cGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGAAAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTTACCAGCCGGTGGGACTTGTTGCGGATGGGCACTTgcggcg                                                      >  1:189930/1‑150 (MQ=255)                                                                                           gATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGACACTTGTTGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATTGTCACTTGCGGCGGGAAGTCGaa                                            <  1:53002/150‑1 (MQ=255)                                                                                               ttGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGc                                        <  1:667585/150‑1 (MQ=255)                                                                                                 gg‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCtt                                      <  2:734707/150‑1 (MQ=255)                                                                                                 gg‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCtt                                      <  2:233003/150‑1 (MQ=255)                                                                                                 gg‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCAGCCCCAGCCCCGCCATCAGTCCCGGGCGGTCTGGCGGGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCtt                                      <  1:192633/150‑1 (MQ=255)                                                                                                               gTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCcgcg                           <  1:661351/150‑1 (MQ=255)                                                                                                                      gTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGTCGCGGTGAttt                                                                                                         >  2:289212/1‑65 (MQ=255)                                                                                                                      gTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGTCGCGGTGAttt                                                                                                         <  1:289212/65‑1 (MQ=255)                                                                                                                               cAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGgat           <  2:163554/150‑1 (MQ=255)                                                                                                                                aGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGgatg          >  1:132879/1‑150 (MQ=255)                                                                                                                                     gATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCgcggatcttcctggagttcgacctgtcactgcaaaacgccaagatcgccaccctcggcgagcgggtagaagacgtgttcttcattaccgatgccgacaaccagcc          >  2:345446‑M2/1‑40 (MQ=255)                                                                                                                                     gATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCgcggatcttcctggagttcgacctgtcactgcaaaacgccaagatcgccaccctcggcgagcgggtagaagacgtgttcttcattaccgatgccgacaaccagcc          <  1:345446‑M2/145‑106 (MQ=255)                                                                                                                                      aTCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCgcggatcttcctggagttcgacctgtcactgcaaaacgcacatcaggccaccctcggcgagcgggtagaagacgtgttcttcattaccgatgccgacaaccagccgctgtc    <  1:480680‑M2/150‑112 (MQ=255)                                                                                                                                        ccGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCgg  <  1:661555/150‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                   CAGGCGGCTGCACAGCTGCGGGTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCGG  >  NC_002947/1781488‑1781769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.