New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1781623	35 (1.110)	3 (0.100)	3/240	NT	8.7%	coding (2496/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	= 1781656	29 (0.950)					coding (2463/2703 nt)	glnD	uridylyltransferase

GTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCGGGTAGTCCTCGGGGTTGCGCAGCGCTTCGGTCAGGC  >  NC_002947/1781509‑1781804                                                                                                                                                       |                                                                                                                                                     gTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGCACACG‑TCTGGACT‑‑CAGGTCGAACTCCAGGAAGATCCGCACTTGGCGCCTCAGCAGTCCCGTGCGGTCTGgcgc                                                                                                                                                    >  1:233003/1‑150 (MQ=255)            gCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGa                                                                                                                                         <  1:432582/150‑1 (MQ=255)            gCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGa                                                                                                                                         <  2:301938/150‑1 (MQ=255)            gCTGGTTGGCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGACCCAGCCGGACCAGCATGCCCGGGCGGTGTGGCGCGGTGATTTCgg                                                                                                                                         >  2:661351/1‑149 (MQ=255)                gTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGCTCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGAt                                                                                                                                     <  2:103443/150‑1 (MQ=255)                                    agaaCACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCAt                                                                                                                 <  1:739809/150‑1 (MQ=255)                                           gTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGat                                                                                                          >  1:13115/1‑149 (MQ=255)                                           gTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAg                                                                                                          <  1:58769/150‑1 (MQ=255)                                              ttctACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGAt                                                                                                       <  2:579906/150‑1 (MQ=255)                                               tctACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATg                                                                                                      <  1:581253/150‑1 (MQ=255)                                                 tACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGt                                                                                                    >  1:163554/1‑150 (MQ=255)                                                    ccGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCAc                                                                                                 >  2:395217/1‑150 (MQ=255)                                                    ccGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCAc                                                                                                 >  2:661555/1‑150 (MQ=255)                                                            cGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGAAAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTTACCAGCCGGTGGGACTTGTTGCGGATGGGCACTTgcggcg                                                                                         >  1:189930/1‑150 (MQ=255)                                                                      gATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGACACTTGTTGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATTGTCACTTGCGGCGGGAAGTCGaa                                                                               <  1:53002/150‑1 (MQ=255)                                                                          ttGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGc                                                                           <  1:667585/150‑1 (MQ=255)                                                                            gg‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCtt                                                                         <  2:233003/150‑1 (MQ=255)                                                                            gg‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCtt                                                                         <  2:734707/150‑1 (MQ=255)                                                                            gg‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCAGCCCCAGCCCCGCCATCAGTCCCGGGCGGTCTGGCGGGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCtt                                                                         <  1:192633/150‑1 (MQ=255)                                                                                          gTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCcgcg                                                              <  1:661351/150‑1 (MQ=255)                                                                                                 gTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGTCGCGGTGAttt                                                                                                                                            <  1:289212/65‑1 (MQ=255)                                                                                                 gTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGTCGCGGTGAttt                                                                                                                                            >  2:289212/1‑65 (MQ=255)                                                                                                          cAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGgat                                              <  2:163554/150‑1 (MQ=255)                                                                                                           aGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGgatg                                             >  1:132879/1‑150 (MQ=255)                                                                                                                gATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCgcggatcttcctggagttcgacctgtcactgcaaaacgccaagatcgccaccctcggcgagcgggtagaagacgtgttcttcattaccgatgccgacaaccagcc                                             >  2:345446‑M2/1‑40 (MQ=255)                                                                                                                gATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCgcggatcttcctggagttcgacctgtcactgcaaaacgccaagatcgccaccctcggcgagcgggtagaagacgtgttcttcattaccgatgccgacaaccagcc                                             <  1:345446‑M2/145‑106 (MQ=255)                                                                                                                 aTCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCgcggatcttcctggagttcgacctgtcactgcaaaacgcacatcaggccaccctcggcgagcgggtagaagacgtgttcttcattaccgatgccgacaaccagccgctgtc                                       <  1:480680‑M2/150‑112 (MQ=255)                                                                                                                   ccGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCgg                                     <  1:661555/150‑1 (MQ=255)                                                                                                                           cccGGGCCTGCTGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATTGTTGAGGATGGTCACTTGCGGCGGGAAGTGGAAGTGCTTGAGCTGGCGCGGTACCCGGCGCTGGATGATGGTCGGGTAGTCCt                             >  2:734195/2‑150 (MQ=255)                                                                                                                           cccGGGCCTGCTGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGga                                               >  2:191124/2‑132 (MQ=255)                                                                                                                           cccGGGCCTGCTGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGga                                               <  1:191124/131‑1 (MQ=255)                                                                                                                              gggCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCGGGTAGTCCTCgg                          <  2:132879/150‑1 (MQ=255)                                                                                                                                  cagcagGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCGGGTAGTCCTCGGGGtt                      <  1:395217/150‑1 (MQ=255)                                                                                                                                                    gggCGCGGTGATTGCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCGGGTAGGCCTCGGGGTTGCGCAGCGCTTCGGTCAg    <  2:189930/149‑1 (MQ=255)                                                                                                                                                      gcgcGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCGGGTAGTCCTCGGGGTTGCGCAGCGCTTCGGTCAGGc  >  1:753180/1‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                     GTCTGACAGCGGCTGGTTGTCGGCATCGGTAATGAAGAACACGTCTTCTACCCGCTCGCCGAGGGTGGCGATCTTGG‑‑‑CGTTTTGCAGTGACAGGTCGAACTCCAGGAAGATCCGCCCCAGCCGGGCCAGCAGGCCCGGGCGGTCTGGCGCGGTGATTTCGAGGATGGTCACCGGCCGCTGGGCATCGTTGAGGATGGTCACTTGCGGCGGGAAGTCGAAGTGCTTGAGCTGCCGCGGTACCCGGCGCTGGATGATGGTCGGGTAGTCCTCGGGGTTGCGCAGCGCTTCGGTCAGGC  >  NC_002947/1781509‑1781804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.