New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1858873	28 (0.880)	7 (0.230)	6/242	NT	20.5%	coding (2010/2259 nt)	PP_1661	dehydrogenase
	?	NC_002947	= 1858902	27 (0.870)					coding (2039/2259 nt)	PP_1661	dehydrogenase

GCGACCTGCTCAAGCGCACCGTGCAGGTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGT  >  NC_002947/1858731‑1859021                                                                                                                                                |                                                                                                                                                     gCGACCTGCTCAAGCGCACCGTGCAGGTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGcggcgg                                                                                                                                               <  2:356500/150‑1 (MQ=255) gCGACCTGCTCAAGCGCACCGTGCAGGTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGcggcgg                                                                                                                                               >  2:307790/1‑150 (MQ=255)       tGCTCAAGCGCACCGTGCAGGTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATAGCCGGGCttggcgatcaac                                                                                                                                          >  1:716284‑M1/1‑138 (MQ=255)             aGCGCACCGTGCAGGTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGt                                                                                                                                   <  1:307790/150‑1 (MQ=255)                  cccGGGCAGGGGCAGGAGAACCAGGCATGGCAGGGTACGGGGATGTAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATCCACGGACGGCCAGTGGACCGCGAACCCGGACACCGACAT‑GGTTGGAGAGCCGCGCAACCCAACGTTGAtt                                                                                                                              <  2:610323/149‑2 (MQ=255)                  aCCGTGCAGGTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATc                                                                                                                              >  2:414505/1‑150 (MQ=255)                      tgcaggtgcaggCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGAt                                                                                                                               <  1:288943/145‑1 (MQ=255)                      tgcaggtgcaggCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGAt                                                                                                                               >  2:288943/1‑145 (MQ=255)                      tcaccttgcaggCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTAGCGCCGCGGGCAACCCAAGGGTGATCGCCa                                                                                                                          >  2:200038/7‑150 (MQ=255)                           gtgcaggCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGccc                                                                                                                     >  2:376025/1‑150 (MQ=255)                                 gCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTAt                                                                                                               >  2:669269/1‑150 (MQ=255)                                       cAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATAGCCGGGCttggcgatcaaccttgggttgcccgccgcgccaaccatgccgga                                                                                                          <  2:716284‑M1/150‑45 (MQ=255)                                        aGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATAGCCGGGCttggcgatcaaccttgggttgcccgccgcgccaaccatgccggtg                                                                                                         <  1:68276‑M1/150‑46 (MQ=255)                                         gggaTGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCaa                                                                                                                                      <  2:152961/116‑1 (MQ=255)                                         ggCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCaa                                                                                                                                      >  1:152961/1‑119 (MQ=255)                                          gCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTAtgccttgcct                                                                                                      <  2:422535/150‑1 (MQ=255)                                                 aGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCttggcgatcaaccttgggttgcccgccgc                                                                                                                         <  2:548620‑M1/124‑30 (MQ=255)                                                 aGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCttggcgatcaaccttgggttgcccgccgc                                                                                                                         >  1:548620‑M1/1‑95 (MQ=255)                                                 aGGGCACGGGCATGCAGGTCAATGGGAAGAGATGAACGATGGCGGTATTAACGGGCAAGCGGTGCACGGCGAGCCCGGCCTCCTCCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAATCCCGGCTATGCCTTGCCTTGTCAAc                                                                                               >  2:737586/1‑150 (MQ=255)                                                     cACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCaa                                                                                                                         <  1:680728/120‑1 (MQ=255)                                                     cACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCaa                                                                                                                         >  2:680728/1‑120 (MQ=255)                                                      aCGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGaa                                                                                          <  2:40355/150‑1 (MQ=255)                                                             tGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGt                                                                                   <  1:376025/150‑1 (MQ=255)                                                                aGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCttggcgatcaaccttgggttgcccgccgcgccaaccatg                                                                                                               <  2:292551‑M1/119‑40 (MQ=255)                                                                aGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCttggcgatcaaccttgggttgcccgccgcgccaaccatg                                                                                                               >  1:292551‑M1/1‑80 (MQ=255)                                                                     aaTGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCggg                                                                           >  2:88771/1‑150 (MQ=255)                                                                        gggCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCaa                                                                                                                                           <  1:734031/83‑1 (MQ=255)                                                                        gggCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCaa                                                                                                                                           >  2:734031/1‑83 (MQ=255)                                                                            agagCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCg                                                                    >  2:55853/1‑150 (MQ=255)                                                                                  ggCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATAATTGGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACa                                                              >  1:93414/1‑150 (MQ=255)                                                                                                  cACGGGCGGGCAGTGGACGGCGAACCCGTCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTGAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCt                                              >  1:836784/1‑150 (MQ=255)                                                                                                                           ccGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCcg                     >  1:439232/1‑150 (MQ=255)                                                                                                                            cGGCCACCGGAAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCcgc                    <  2:430740/150‑1 (MQ=255)                                                                                                                                cACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAgcccggctatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacctgcatgcccgtgccctgccatgcct                <  1:68276‑M2/150‑106 (MQ=255)                                                                                                                                 tccgGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAgcccggctatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacctgcatgcccgtgccctgccatgcctg               <  2:716284‑M2/149‑107 (MQ=255)                                                                                                                                     gCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAATCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGc           >  1:814771/1‑150 (MQ=255)                                                                                                                                      cAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAgccaaccatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacct                                         <  2:292551‑M2/119‑81 (MQ=255)                                                                                                                                      cAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAgccaaccatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacct                                         >  1:292551‑M2/1‑39 (MQ=255)                                                                                                                                           gTTGGGGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGt      <  2:83715/150‑1 (MQ=255)                                                                                                                                             tGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGTCGTTGATCGGGCGTATCGGCAACACCGGCGTGCAGTCCCTACTCGGCACCCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGa    <  1:200038/150‑1 (MQ=255)                                                                                                                                             tGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGa    <  1:750702/150‑1 (MQ=255)                                                                                                                                               gcgcGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGt  <  1:669269/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     GCGACCTGCTCAAGCGCACCGTGCAGGTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCAT‑GGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGT  >  NC_002947/1858731‑1859021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.