New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1858873	28 (0.880)	7 (0.230)	6/242	NT	20.5%	coding (2010/2259 nt)	PP_1661	dehydrogenase
	?	NC_002947	= 1858902	27 (0.870)					coding (2039/2259 nt)	PP_1661	dehydrogenase

GTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGACG  >  NC_002947/1858757‑1859051                                                                                                                                                  |                                                                                                                                                      gtgcaggCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGccc                                                                                                                                                   >  2:376025/1‑150 (MQ=255)       gCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTAt                                                                                                                                             >  2:669269/1‑150 (MQ=255)                gCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTAtgccttgcct                                                                                                                                    <  2:422535/150‑1 (MQ=255)                       aGGGCACGGGCATGCAGGTCAATGGGAAGAGATGAACGATGGCGGTATTAACGGGCAAGCGGTGCACGGCGAGCCCGGCCTCCTCCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAATCCCGGCTATGCCTTGCCTTGTCAAc                                                                                                                             >  2:737586/1‑150 (MQ=255)                           cACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCaa                                                                                                                                                       >  2:680728/1‑120 (MQ=255)                           cACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCaa                                                                                                                                                       <  1:680728/120‑1 (MQ=255)                            aCGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGaa                                                                                                                        <  2:40355/150‑1 (MQ=255)                                   tGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGt                                                                                                                 <  1:376025/150‑1 (MQ=255)                                           aaTGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCggg                                                                                                         >  2:88771/1‑150 (MQ=255)                                                  agagCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCg                                                                                                  >  2:55853/1‑150 (MQ=255)                                                        ggCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATAATTGGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACa                                                                                            >  1:93414/1‑150 (MQ=255)                                                                        cACGGGCGGGCAGTGGACGGCGAACCCGTCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTGAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCt                                                                            >  1:836784/1‑150 (MQ=255)                                                                                                 ccGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCcg                                                   >  1:439232/1‑150 (MQ=255)                                                                                                  cGGCCACCGGAATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCcgc                                                  <  2:430740/150‑1 (MQ=255)                                                                                                      cACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAgcccggctatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacctgcatgcccgtgccctgccatgcct                                              <  1:68276‑M2/150‑106 (MQ=255)                                                                                                       tccgGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAgcccggctatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacctgcatgcccgtgccctgccatgcctg                                             <  2:716284‑M2/149‑107 (MQ=255)                                                                                                           gCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAATCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGc                                         >  1:814771/1‑150 (MQ=255)                                                                                                            cATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAgccaaccatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacct                                                                       <  2:292551‑M2/119‑81 (MQ=255)                                                                                                            cATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAgccaaccatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacct                                                                       >  1:292551‑M2/1‑39 (MQ=255)                                                                                                                gTTGGGGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGt                                    <  2:83715/150‑1 (MQ=255)                                                                                                                  tGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGTCGTTGATCGGGCGTATCGGCAACACCGGCGTGCAGTCCCTACTCGGCACCCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGa                                  <  1:200038/150‑1 (MQ=255)                                                                                                                  tGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGa                                  <  1:750702/150‑1 (MQ=255)                                                                                                                    gcgcGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGt                                <  1:669269/150‑1 (MQ=255)                                                                                                                      gcggcgGGCAACCCAAGGTTGATCGCCAAgccaaccatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacctgcatgcccgtgccct                                                        >  1:548620‑M2/1‑29 (MQ=255)                                                                                                                      gcggcgGGCAACCCAAGGTTGATCGCCAAgccaaccatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacctgcatgcccgtgccct                                                        <  2:548620‑M2/124‑96 (MQ=255)                                                                                                                            ggCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCaa                                                                   <  2:485229/107‑1 (MQ=255)                                                                                                                            ggCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCATGGTCGGCaa                                                                   >  1:485229/1‑107 (MQ=255)                                                                                                                                gcccAAGGTTGATCGCGGAGGGCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGACCAGCAAGGTGAGTTGCAGCTGTGCa                    <  2:439232/149‑1 (MQ=255)                                                                                                                                aCCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCa                    <  1:414505/150‑1 (MQ=255)                                                                                                                                     aGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAAt               <  1:200711/150‑1 (MQ=255)                                                                                                                                       gTTGATCGCCAAgcccggctatgccggtggccgggttcgccgtccactgcccgcccgtgcataccgccaactgccagctctgcccattgacctgcatgcccgtgccctgccatgcctggttggcctgcacctgcacggtgcgcttgagca             >  1:716284‑M2/1‑12 (MQ=255)                                                                                                                                       gTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGc                                                     <  2:662154/110‑1 (MQ=255)                                                                                                                                       gTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGc                                                     >  1:662154/1‑110 (MQ=255)                                                                                                                                       gTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATga             <  1:279911/150‑1 (MQ=255)                                                                                                                                            tCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCaac               >  2:589535/1‑142 (MQ=255)                                                                                                                                            tCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAAt               <  1:589535/143‑1 (MQ=255)                                                                                                                                            tCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGAcc        >  2:563091/1‑150 (MQ=255)                                                                                                                                              gCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTg      <  2:836784/150‑1 (MQ=255)                                                                                                                                               ccAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTgg     >  1:788968/1‑150 (MQ=255)                                                                                                                                                cAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGa    >  1:401283/1‑150 (MQ=255)                                                                                                                                                 aaGCCCGGCTATGCCTTGCCTGGTCATCCGTAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGAc   >  1:240381/1‑150 (MQ=255)                                                                                                                                                  aGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGACg  >  2:60442/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                      GTGCAGGCCAACCAGGCATGGCAGGGCACGGGCATGCAGGTCAATGGGCAGAGCTGGCAGTTGGCGGTATGCACGGGCGGGCAGTGGACGGCGAACCCGGCCACCGGCATGGTTGGCGCGGCGGGCAACCCAAGGTTGATCGCCAAGCCCGGCTATGCCTTGCCTGGTCAACCGGAAGGGGCGTTGATCGGGCGTATCGGCAACAGCGGCGTGCCGTTCCTGGTCGGCAACCAGGTGCAATTGCCGCGTGGCCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGACG  >  NC_002947/1858757‑1859051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.