New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2447872 =	31 (0.980)	4 (0.130)	4/238	NT	13.0%	coding (3254/3318 nt)	PP_2146	SNF2/RAD54 family helicase
	?	NC_002947	2447915 =	24 (0.790)					coding (3211/3318 nt)	PP_2146	SNF2/RAD54 family helicase

GGCGGGTGGAGATTGGTCGGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCAC  >  NC_002947/2447734‑2448016                                                                                                                                           |                                                                                                                                                    ggcggGTGGAGATTGGTCGGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGcc                                                                                                                                       >  1:197044/1‑150 (MQ=255)               ggTCGGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCcag                                                                                                                         <  2:563538/150‑1 (MQ=255)                 tCGGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCcagca                                                                                                                       >  1:107359/1‑150 (MQ=255)                         gccggccCTTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTggcg                                                                                                               <  1:398358/150‑1 (MQ=255)                           gctaccgaccgtgcctaccgcatcggccaggacaaaccggtgttcgtgttcaagctgattacccggggtacggtggaagagaagatccagttgttgcagcaggaaaaggcagCATTGGCCGCCAGCCTGCCCGCCGTCCAGCAGGCTggc                                                                                                                >  1:817982‑M1/113‑150 (MQ=255)                           cggccCTTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTggcggc                                                                                                             <  1:508209/150‑1 (MQ=255)                              cccTTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCaa                                                                                                          >  1:64106/1‑150 (MQ=255)                                 gaccgtgcctaccgcatcggccaggacaaaccggtgttcgtgttcaagctgattacccggggtacggtggaagagaagatccagttgttgcagcaggaaaaggcagCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAAtgc                                                                                                       >  1:597724‑M1/107‑150 (MQ=255)                                   tCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCAAAagcgg                                                                                                     >  2:607093/1‑148 (MQ=255)                                     gcgGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGcc                                                                                                   >  2:576591/1‑150 (MQ=255)                                        ggTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGTCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCttt                                                                                                <  2:391498/150‑1 (MQ=255)                                        ggTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCttt                                                                                                >  2:148590/1‑150 (MQ=255)                                         gTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGc                                                                                                                                        >  2:825670/1‑109 (MQ=255)                                         gTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGc                                                                                                                                        <  1:825670/109‑1 (MQ=255)                                          tAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCTCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTc                                                                                              <  1:746410/150‑1 (MQ=255)                                                   tCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGcaa                                                                                     <  2:64106/150‑1 (MQ=255)                                                    gccaggacaaaccggtgttcgtgttcaagctgattacccggggtacggtggaagagaagatccagttgttgcagcaggaaaaggcagCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGcc                                                                                                   <  1:535504‑M1/48‑1 (MQ=255)                                                    gccaggacaaaccggtgttcgtgttcaagctgattacccggggtacggtggaagagaagatccagttgttgcagcaggaaaaggcagCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGcc                                                                                                   >  2:535504‑M1/88‑135 (MQ=255)                                                                   ccTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCca                                                                                                                          <  1:418390/97‑1 (MQ=255)                                                                   ccTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCca                                                                                                                          >  2:418390/1‑97 (MQ=255)                                                                    cTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGAtcttctctt                                                                    <  1:148590/150‑1 (MQ=255)                                                                            tACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTa                                                            >  1:745746/1‑150 (MQ=255)                                                                                  ccgcGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCgg                                                      <  1:591769/150‑1 (MQ=255)                                                                                  ccgcGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCgg                                                      <  1:576591/150‑1 (MQ=255)                                                                                   cgcgCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCggg                                                     <  1:357570/150‑1 (MQ=255)                                                                                        ttCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATc                                                <  2:818380/150‑1 (MQ=255)                                                                                         tCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCgg                                                      >  2:291747/1‑143 (MQ=255)                                                                                         tCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCgg                                                      <  1:291747/143‑1 (MQ=255)                                                                                            cGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCt                                            >  1:560156/1‑150 (MQ=255)                                                                                                  aTGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTgaaca                                      <  2:107359/150‑1 (MQ=255)                                                                                                    ggCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTgaacacg                                    <  2:197044/150‑1 (MQ=255)                                                                                                            cAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCgg                            <  1:586729/150‑1 (MQ=255)                                                                                                               ggCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGttt                         <  2:745746/150‑1 (MQ=255)                                                                                                                          cttcATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCGATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGa              >  2:715246/1‑150 (MQ=255)                                                                                                                           ttcATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGAt             >  1:38924/1‑150 (MQ=255)                                                                                                                                      gccgccATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCAc  <  1:607093/150‑1 (MQ=255)                                                                                                                                      gccgccATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCAc  <  1:216361/150‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                    GGCGGGTGGAGATTGGTCGGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTG‑CC‑‑CAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCAC  >  NC_002947/2447734‑2448016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.