New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2447872 =	31 (0.980)	4 (0.130)	4/238	NT	13.0%	coding (3254/3318 nt)	PP_2146	SNF2/RAD54 family helicase
	?	NC_002947	2447915 =	24 (0.790)					coding (3211/3318 nt)	PP_2146	SNF2/RAD54 family helicase

TTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCACGGTCGGTAGCCTGGTTTTCGCTCGCCGGGTTCCACCAG  >  NC_002947/2447766‑2448054                                                                                                                                                      |                                                                                                                                            gaccgtgcctaccgcatcggccaggacaaaccggtgttcgtgttcaagctgattacccggggtacggtggaagagaagatccagttgttgcagcaggaaaaggcagCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAAtgc                                                                                                                                             >  1:597724‑M1/107‑150 (MQ=255)   tCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCAAAagcgg                                                                                                                                           >  2:607093/1‑148 (MQ=255)     gcgGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGcc                                                                                                                                         >  2:576591/1‑150 (MQ=255)        ggTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGTCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCttt                                                                                                                                      <  2:391498/150‑1 (MQ=255)        ggTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCttt                                                                                                                                      >  2:148590/1‑150 (MQ=255)          tAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCTCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTc                                                                                                                                    <  1:746410/150‑1 (MQ=255)                   tCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGcaa                                                                                                                           <  2:64106/150‑1 (MQ=255)                    gccaggacaaaccggtgttcgtgttcaagctgattacccggggtacggtggaagagaagatccagttgttgcagcaggaaaaggcagCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGcc                                                                                                                                         <  1:535504‑M1/48‑1 (MQ=255)                    gccaggacaaaccggtgttcgtgttcaagctgattacccggggtacggtggaagagaagatccagttgttgcagcaggaaaaggcagCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGcc                                                                                                                                         >  2:535504‑M1/88‑135 (MQ=255)                                    cTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGAtcttctctt                                                                                                          <  1:148590/150‑1 (MQ=255)                                            tACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTa                                                                                                  >  1:745746/1‑150 (MQ=255)                                                  ccgcGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCgg                                                                                            <  1:576591/150‑1 (MQ=255)                                                  ccgcGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCgg                                                                                            <  1:591769/150‑1 (MQ=255)                                                   cgcgCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCggg                                                                                           <  1:357570/150‑1 (MQ=255)                                                        ttCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATc                                                                                      <  2:818380/150‑1 (MQ=255)                                                         tCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCgg                                                                                            >  2:291747/1‑143 (MQ=255)                                                         tCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCgg                                                                                            <  1:291747/143‑1 (MQ=255)                                                            cGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCt                                                                                  >  1:560156/1‑150 (MQ=255)                                                                  aTGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTgaaca                                                                            <  2:107359/150‑1 (MQ=255)                                                                    ggCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTgaacacg                                                                          <  2:197044/150‑1 (MQ=255)                                                                            cAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCgg                                                                  <  1:586729/150‑1 (MQ=255)                                                                               ggCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGttt                                                               <  2:745746/150‑1 (MQ=255)                                                                                          cttcATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCGATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGa                                                    >  2:715246/1‑150 (MQ=255)                                                                                           ttcATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGAt                                                   >  1:38924/1‑150 (MQ=255)                                                                                                      ggcagcattggccgccagcctgctggacggcgggcaggctgggcaatgCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGc                                                       <  1:535504‑M2/87‑1 (MQ=255)                                                                                                      ggcagcattggccgccagcctgctggacggcgggcaggctgggcaatgCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGc                                                       >  2:535504‑M2/49‑135 (MQ=255)                                                                                                      gccgccATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCAc                                        <  1:607093/150‑1 (MQ=255)                                                                                                      gccgccATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCAc                                        <  1:216361/150‑1 (MQ=255)                                                                                                          gcattggccgccagcctgctggacggcgggcaggctgggcaatgCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCAcggtc                                    >  1:597724‑M2/45‑150 (MQ=255)                                                                                                                gccagcctgctggacggcgggcaggctggcggccaatgCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCACGGTCGGTAGc                              >  1:817982‑M2/39‑150 (MQ=255)                                                                                                                      cTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCACGGTCGGTAGCCTGGtt                        >  2:530938/1‑150 (MQ=255)                                                                                                                                   agcagGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGAtctt                                                                                                               >  2:134599/1‑50 (MQ=255)                                                                                                                                   agcagGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGAtctt                                                                                                               <  1:134599/50‑1 (MQ=255)                                                                                                                                            gcggcCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCACGGTCGGTAGCCTGGTTTTCGCTCGCCGGGTTCCACCAg  <  2:38924/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                            TTTCGCGGGTAAACCCGCTCCTACGCTCTATCCCCCTTTGGCCTACCGCCCGCGCTTCCCGGGCAATGGCGCGAACAGGGCCTCGATTTCTTCATCGCCAAGCCGCCATTGCCCAGCCTGCCCGCCGTCCAGCAGGCTGGCGGCCAATGCTGCCTTTTCCTGCTGCAACAACTGGATCTTCTCTTCCACCGTACCCCGGGTAATCAGCTTGAACACGAACACCGGTTTGTCCTGGCCGATGCGGTAGGCACGGTCGGTAGCCTGGTTTTCGCTCGCCGGGTTCCACCAG  >  NC_002947/2447766‑2448054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.