New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2575777	46 (1.450)	3 (0.100)	3/238	NT	6.4%	coding (911/1689 nt)	PP_2258	sensory box protein
	?	NC_002947	= 2575803	43 (1.420)					coding (937/1689 nt)	PP_2258	sensory box protein

CCTGTACCCGCAGGATGACGAAGATGCCGACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGAT  >  NC_002947/2575631‑2575922                                                                                                                                                   |                                                                                                                                                  ccTGTACCCGCAGGATGACGAAGATGCCGACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGgc                                                                                                                                                >  1:348921/1‑150 (MQ=255) ccTGTACCCGCAGGATGACGAAGATGCCGACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGgc                                                                                                                                                >  1:790448/1‑150 (MQ=255)                   cGAAGATGCCGACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTACACGCCAGCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCt                                                                                                                              >  1:404883/1‑150 (MQ=255)                    gAAGATGCCGACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTg                                                                                                                             >  2:117618/1‑150 (MQ=255)                     aaGATGCCGACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTgc                                                                                                                            <  1:117618/150‑1 (MQ=255)                     aaGATGCCGACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACACGACCGTGGCGCGCGTGCGCCGGGCGCTgc                                                                                                                            <  1:157535/150‑1 (MQ=255)                             gACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAacggt                                                                                                                    <  1:460527‑M2/150‑6 (MQ=255)                                acCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGa                                                                                                                  <  1:593666/149‑1 (MQ=255)                                acCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAg                                                                                                                 <  2:259727/150‑1 (MQ=255)                                acCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAACAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGa                                                                                                                  >  2:593666/1‑149 (MQ=255)                                 cccTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTtgcgcagcgcccggcgcacgcgcgccacggtctgg                                                                                                                <  1:559197‑M1/150‑36 (MQ=255)                                   cTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCtg                                                                                                              <  2:139437/150‑1 (MQ=255)                                    tGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCtgt                                                                                                             <  2:422745/150‑1 (MQ=255)                                        gcgcCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCt                                                                                                         >  2:153692/1‑150 (MQ=255)                                         cgcCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCtt                                                                                                        <  1:833455/150‑1 (MQ=255)                                         cgcCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCtt                                                                                                        >  2:114072/1‑150 (MQ=255)                                            cACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTtac                                                                                                     <  1:367780/150‑1 (MQ=255)                                            cACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTtac                                                                                                     <  1:114072/150‑1 (MQ=255)                                               gCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTg                                                                                                                                                  >  2:334559/1‑102 (MQ=255)                                               gCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTg                                                                                                                                                  <  1:334559/102‑1 (MQ=255)                                                ccGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTAcc                                                                                                 <  1:153692/150‑1 (MQ=255)                                                                 gtgGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAAc                                                                                   >  2:785086/1‑147 (MQ=255)                                                                 gtgGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAAc                                                                                   <  1:785086/147‑1 (MQ=255)                                                                      cAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCAc                                                                           >  2:785890/1‑150 (MQ=255)                                                                      cAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTACGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCAc                                                                           >  1:371337/1‑150 (MQ=255)                                                                        agcagcGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTAGTACCAGCCCAAGGTCAACCTGCGCACTg                                                                         <  2:460527/150‑1 (MQ=255)                                                                             cgcgGGCGGGACCGTTAACCGCGGTTCTACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAg                                                                    <  2:185742/150‑1 (MQ=255)                                                                             cgcgGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAg                                                                    <  2:198005/150‑1 (MQ=255)                                                                                    gcAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCCAGGTCAACCTGCGCACTGGCAAg                                                                    <  1:367343/143‑1 (MQ=255)                                                                                    gcAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAg                                                                    >  2:367343/1‑143 (MQ=255)                                                                                    gcAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTgg                                                             >  1:428369/1‑150 (MQ=255)                                                                                           ttACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGa                                                      <  2:404883/150‑1 (MQ=255)                                                                                           ttACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGa                                                      <  2:790448/150‑1 (MQ=255)                                                                                                accTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTtgcgcagcgcccggcgcacgcgcgccacggtc                                                                                                                   <  1:528573‑M1/84‑33 (MQ=255)                                                                                                accTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTtgcgcagcgcccggcgcacgcgcgccacggtc                                                                                                                   >  2:528573‑M1/1‑52 (MQ=255)                                                                                                 ccTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCtt                                                >  1:484208/1‑150 (MQ=255)                                                                                                        gACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTgcgc                                         >  1:768093/1‑150 (MQ=255)                                                                                                          cGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTg                                       <  2:654634/150‑1 (MQ=255)                                                                                                               cGCAGGAACAGGAACTCCAGGCCACCCTCCAGACCGTGTCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGc                                  <  2:371337/150‑1 (MQ=255)                                                                                                                gCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGc                                                  >  2:337985/1‑133 (MQ=255)                                                                                                                gCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGc                                                  <  1:337985/133‑1 (MQ=255)                                                                                                                  aggaacaggaacTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGc                               <  2:465990/150‑1 (MQ=255)                                                                                                                     aacaggaacTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAg                            >  1:694114/1‑150 (MQ=255)                                                                                                                     aacaggaacTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAg                            <  1:785890/150‑1 (MQ=255)                                                                                                                          gaacTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgt                       >  1:47252/1‑150 (MQ=255)                                                                                                                              tCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCa                             >  1:238666/1‑140 (MQ=255)                                                                                                                              tCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCa                             <  2:238666/140‑1 (MQ=255)                                                                                                                              tCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgtggtg                   >  1:132203/1‑150 (MQ=255)                                                                                                                               cAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgtggtgt                  <  2:822816/150‑1 (MQ=255)                                                                                                                                     cacccaccAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTgcc            <  2:725806/150‑1 (MQ=255)                                                                                                                                        ccaccaGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTgccgcc         <  2:428369/150‑1 (MQ=255)                                                                                                                                          accaGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgt                       <  1:712552/134‑1 (MQ=255)                                                                                                                                          accaGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgt                       >  2:712552/1‑134 (MQ=255)                                                                                                                                           ccaGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAacggtctggtgggtggccttgagttcctgttcctgcgacacgtcgaacaggtggtaacggttgcgcccgcgctgcttggccacatacatggcctggtcggcgtggcgcaccaggg      <  1:559197‑M2/150‑116 (MQ=255)                                                                                                                                            caGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCTGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATGGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGc     <  2:348921/150‑1 (MQ=255)                                                                                                                                              gACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAacggtctggtgggtggccttgagttcctgttcctgcgacacgtcgaacaggt                                                                     >  2:528573‑M2/1‑32 (MQ=255)                                                                                                                                              gACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAacggtctggtgggtggccttgagttcctgttcctgcgacacgtcgaacaggt                                                                     <  1:528573‑M2/84‑53 (MQ=255)                                                                                                                                               aCCGTtgcgcagcgcccggcgcacgcgcgccacggtctggtgggtggccttgagttcctgttcctgcgacacgtcgaacaggtggtaacggttgcgcccgcgctgcttggccacatacatggcctggtcggcgtggcgcaccagggtgtc  <  1:460527‑M1/150‑146 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CCTGTACCCGCAGGATGACGAAGATGCCGACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGAT  >  NC_002947/2575631‑2575922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.