New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2575777	46 (1.450)	3 (0.100)	3/238	NT	6.4%	coding (911/1689 nt)	PP_2258	sensory box protein
	?	NC_002947	= 2575803	43 (1.420)					coding (937/1689 nt)	PP_2258	sensory box protein

GACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTCCTGCCCTGGGTAGAGCAGACCG  >  NC_002947/2575659‑2575947                                                                                                                                                 |                                                                                                                                                 gACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAacggt                                                                                                                                             <  1:460527‑M2/150‑6 (MQ=255)    acCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGa                                                                                                                                           <  1:593666/149‑1 (MQ=255)    acCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAg                                                                                                                                          <  2:259727/150‑1 (MQ=255)    acCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAACAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGa                                                                                                                                           >  2:593666/1‑149 (MQ=255)       cTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCtg                                                                                                                                       <  2:139437/150‑1 (MQ=255)        tGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCtgt                                                                                                                                      <  2:422745/150‑1 (MQ=255)            gcgcCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCt                                                                                                                                  >  2:153692/1‑150 (MQ=255)             cgcCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCtt                                                                                                                                 <  1:833455/150‑1 (MQ=255)             cgcCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCtt                                                                                                                                 >  2:114072/1‑150 (MQ=255)                cACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTtac                                                                                                                              <  1:114072/150‑1 (MQ=255)                cACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTtac                                                                                                                              <  1:367780/150‑1 (MQ=255)                    ccGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTAcc                                                                                                                          <  1:153692/150‑1 (MQ=255)                                     gtgGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAAc                                                                                                            <  1:785086/147‑1 (MQ=255)                                     gtgGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAAc                                                                                                            >  2:785086/1‑147 (MQ=255)                                          cAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCAc                                                                                                    >  2:785890/1‑150 (MQ=255)                                          cAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTACGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCAc                                                                                                    >  1:371337/1‑150 (MQ=255)                                            agcagcGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTAGTACCAGCCCAAGGTCAACCTGCGCACTg                                                                                                  <  2:460527/150‑1 (MQ=255)                                                 cgcgGGCGGGACCGTTAACCGCGGTTCTACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAg                                                                                             <  2:185742/150‑1 (MQ=255)                                                 cgcgGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAg                                                                                             <  2:198005/150‑1 (MQ=255)                                                        gcAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCCAGGTCAACCTGCGCACTGGCAAg                                                                                             <  1:367343/143‑1 (MQ=255)                                                        gcAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAg                                                                                             >  2:367343/1‑143 (MQ=255)                                                        gcAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTgg                                                                                      >  1:428369/1‑150 (MQ=255)                                                               ttACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGa                                                                               <  2:790448/150‑1 (MQ=255)                                                               ttACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGa                                                                               <  2:404883/150‑1 (MQ=255)                                                                     ccTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCtt                                                                         >  1:484208/1‑150 (MQ=255)                                                                            gACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTgcgc                                                                  >  1:768093/1‑150 (MQ=255)                                                                              cGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTg                                                                <  2:654634/150‑1 (MQ=255)                                                                                   cGCAGGAACAGGAACTCCAGGCCACCCTCCAGACCGTGTCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGc                                                           <  2:371337/150‑1 (MQ=255)                                                                                    gCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGc                                                                           <  1:337985/133‑1 (MQ=255)                                                                                    gCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGc                                                                           >  2:337985/1‑133 (MQ=255)                                                                                      aggaacaggaacTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGc                                                        <  2:465990/150‑1 (MQ=255)                                                                                         aacaggaacTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAg                                                     <  1:785890/150‑1 (MQ=255)                                                                                         aacaggaacTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAg                                                     >  1:694114/1‑150 (MQ=255)                                                                                              gaacTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgt                                                >  1:47252/1‑150 (MQ=255)                                                                                                  tCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCa                                                      <  2:238666/140‑1 (MQ=255)                                                                                                  tCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCa                                                      >  1:238666/1‑140 (MQ=255)                                                                                                  tCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgtggtg                                            >  1:132203/1‑150 (MQ=255)                                                                                                   cAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgtggtgt                                           <  2:822816/150‑1 (MQ=255)                                                                                                         cacccaccAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTgcc                                     <  2:725806/150‑1 (MQ=255)                                                                                                            ccaccaGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTgccgcc                                  <  2:428369/150‑1 (MQ=255)                                                                                                              accaGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgt                                                <  1:712552/134‑1 (MQ=255)                                                                                                              accaGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCgt                                                >  2:712552/1‑134 (MQ=255)                                                                                                               ccaGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAacggtctggtgggtggccttgagttcctgttcctgcgacacgtcgaacaggtggtaacggttgcgcccgcgctgcttggccacatacatggcctggtcggcgtggcgcaccaggg                               <  1:559197‑M2/150‑116 (MQ=255)                                                                                                                caGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCTGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATGGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGc                              <  2:348921/150‑1 (MQ=255)                                                                                                                  gcgcccggCGCACGCGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGa                            >  1:208838/7‑150 (MQ=255)                                                                                                                  gACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAacggtctggtgggtggccttgagttcctgttcctgcgacacgtcgaacaggt                                                                                              >  2:528573‑M2/1‑32 (MQ=255)                                                                                                                  gACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAacggtctggtgggtggccttgagttcctgttcctgcgacacgtcgaacaggt                                                                                              <  1:528573‑M2/84‑53 (MQ=255)                                                                                                                                 gcgcCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTCCTGCCCTGGGt             <  2:484208/150‑1 (MQ=255)                                                                                                                                            tGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTCCTGCCCTGGGTAGAGCAgacct  >  2:545369/1‑149 (MQ=255)                                                                                                                                            tGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTCCTGCCCTGGGTAGAGCAgaccg  >  1:830664/1‑150 (MQ=255)                                                                                                                                             gcgcAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTc                        <  1:307325/127‑1 (MQ=255)                                                                                                                                             gcgcAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTc                        <  1:307324/127‑1 (MQ=255)                                                                                                                                             gcgcAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTc                        >  2:307324/1‑127 (MQ=255)                                                                                                                                             gcgcAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTc                        >  2:307325/1‑127 (MQ=255)                                                                                                                                                 |                                                                                                                                                 GACACCCTGGTGCGCCACGCCGACCAGGCCATGTATGTGGCCAAGCAGCGCGGGCGCAACCGTTACCACCTGTTCGACGTGTCGCAGGAACAGGAACTCAAGGCCACCCACCAGACCGTGGCGCGCGTGCGCCGGGCGCTGCGCAACGGTGAGCTGTGCCTTTACTACCAGCCCAAGGTCAACCTGCGCACTGGCAAGGTACTGGGCTTCGAGGGCTTATTGCGCTGGCAGCGGCCAGGCCGTGGTGTGGTGCCGCCAGGCGATTTCCTGCCCTGGGTAGAGCAGACCG  >  NC_002947/2575659‑2575947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.