New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2747292 =	29 (0.920)	3 (0.100)	3/240	NT	10.0%	coding (520/1287 nt)	PP_2402	sensor histidine kinase
	?	NC_002947	2747314 =	26 (0.850)					coding (498/1287 nt)	PP_2402	sensor histidine kinase

TGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCT  >  NC_002947/2747145‑2747438                                                                                                                                                    |                                                                                                                                                    ccggggcccaatgcgcacttccaggcgcacctgaagctggccgacggcgcgccactgaccatcgacgtgacgccagcaccggtcccggtagcccgttggttgcccgtggtgctgctgattcagctggctgtgctgttgctgtgtaccTgg                                                                                                                                                   >  1:468688‑M1/148‑150 (MQ=255) ccggggcccaatgcgcacttccaggcgcacctgaagctggccgacggcgcgccactgaccatcgacgtgacgccagcaccggtcccggtagcccgttggttgcccgtggtgctgctgattcagctggctgtgctgttgctgtgtaccTgg                                                                                                                                                   <  1:68216‑M1/3‑1 (MQ=255) ccggggcccaatgcgcacttccaggcgcacctgaagctggccgacggcgcgccactgaccatcgacgtgacgccagcaccggtcccggtagcccgttggttgcccgtggtgctgctgattcagctggctgtgctgttgctgtgtaccTgg                                                                                                                                                   <  1:574169‑M1/3‑1 (MQ=255)   aGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGcc                                                                                                                                                 >  1:64974/1‑150 (MQ=255)           agcaATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTAc                                                                                                                                         >  1:772409/1‑150 (MQ=255)                   gcgcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCgccag‑cc                                                                                                                                <  2:684272/150‑1 (MQ=255)                     gcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGccag‑ccag                                                                                                                              >  2:486227/1‑150 (MQ=255)                      ccTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAgg                                                                                                                             <  2:34336/150‑1 (MQ=255)                        ggCAGCGCGTTGCAGGCCACGGCAGCGTAACGCGCCGCGCGTGGGCCGCTTTCATCCAGTTGGACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTa                                                                                                                           <  2:841415/149‑1 (MQ=255)                            gggCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTAcaca                                                                                                                       <  1:414893/150‑1 (MQ=255)                                  tGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGCGGTTGTCCACTGCCTTGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACacagcaaca                                                                                                                 <  2:116654/150‑1 (MQ=255)                                  tGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACacagcaaca                                                                                                                 >  1:551374/1‑150 (MQ=255)                                        ccACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAacagcacag                                                                                                           >  2:303418/1‑150 (MQ=255)                                                           cTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGcac                                                                                        >  2:667197/1‑150 (MQ=255)                                                            tCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGGGAG‑GCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGcacc                                                                                       >  1:732998/1‑150 (MQ=255)                                                            tCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAacagcacagc                                                                                                          >  1:545561/1‑131 (MQ=255)                                                            tCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAacagcacagc                                                                                                          <  2:545561/131‑1 (MQ=255)                                                                 acgtgacgccagcaccggtcccggtagcccgttggttgcccgtggtgctgctgattcagctggctgtgctgttgctgtgtaccTGGCCAGGCGTACCGCCAG‑CCAGGTaca                                                                                                                         <  2:415535‑M1/28‑1 (MQ=255)                                                                 acgtgacgccagcaccggtcccggtagcccgttggttgcccgtggtgctgctgattcagctggctgtgctgttgctgtgtaccTGGCCAGGCGTACCGCCAG‑CCAGGTaca                                                                                                                         >  1:415535‑M1/84‑111 (MQ=255)                                                                       gCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGcaacca                                                                            >  1:288453/1‑150 (MQ=255)                                                                        cTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGcaaccaa                                                                           <  2:772409/150‑1 (MQ=255)                                                                         tttCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGcaaccaac                                                                          >  1:765438/1‑150 (MQ=255)                                                                                  gTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCg                                                                 >  2:655879/1‑150 (MQ=255)                                                                                   ttGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCgg                                                                <  1:486227/150‑1 (MQ=255)                                                                                      aaCGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGAc                                                             <  2:551374/150‑1 (MQ=255)                                                                                                  gTCAGGGTGGAGGTTGTCCACTGCCTGGGCGAGACGGGTTAGGGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGt                                                 >  2:652582/1‑150 (MQ=255)                                                                                                               ttGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTCCCGCCAG‑CCAGGTACacag                                                                                                                      <  2:825773/68‑1 (MQ=255)                                                                                                               ttGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACacag                                                                                                                      >  1:825773/1‑68 (MQ=255)                                                                                                                       tGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGAGTCACGTCGATGGTCAGTGgcgc                            <  1:667197/150‑1 (MQ=255)                                                                                                                             ggCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTc                      <  1:303418/150‑1 (MQ=255)                                                                                                                              gCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCg                     >  1:491522/1‑150 (MQ=255)                                                                                                                                cAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGc                   <  1:515833/150‑1 (MQ=255)                                                                                                                                 tgtgctgttgctgtgtaccTGGCT‑GGCGGTACGCCTGGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGcc                  <  2:574169‑M1/131‑1 (MQ=255)                                                                                                                                       gTTAGCCGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGGACCACGGGCCACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTc            <  1:61001/150‑1 (MQ=255)                                                                                                                                             gggCCGATGGCCAGGAGTAAAGACAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAAAGGGCTAACGGGAACGGTGCTGGAGTCACGTCGATGGTCAGTGGCGAGACGTCGGCCAGCTTCAGGTgc      >  2:601563/1‑150 (MQ=255)                                                                                                                                              ggCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTgcg     >  2:697396/1‑150 (MQ=255)                                                                                                                                                 cGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCt  >  1:55911/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCT  >  NC_002947/2747145‑2747438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.