New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2747292 =	29 (0.920)	3 (0.100)	3/240	NT	10.0%	coding (520/1287 nt)	PP_2402	sensor histidine kinase
	?	NC_002947	2747314 =	26 (0.850)					coding (498/1287 nt)	PP_2402	sensor histidine kinase

GCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCTGGAAGTGCGCATTGGGCCCCGG  >  NC_002947/2747165‑2747460                                                                                                                                                       |                                                                                                                                                   gcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGccag‑ccag                                                                                                                                                    >  2:486227/1‑150 (MQ=255)  ccTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAgg                                                                                                                                                   <  2:34336/150‑1 (MQ=255)    ggCAGCGCGTTGCAGGCCACGGCAGCGTAACGCGCCGCGCGTGGGCCGCTTTCATCCAGTTGGACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTa                                                                                                                                                 <  2:841415/149‑1 (MQ=255)        gggCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTAcaca                                                                                                                                             <  1:414893/150‑1 (MQ=255)              tGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGCGGTTGTCCACTGCCTTGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACacagcaaca                                                                                                                                       <  2:116654/150‑1 (MQ=255)              tGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACacagcaaca                                                                                                                                       >  1:551374/1‑150 (MQ=255)                    ggccgacggcgcgccactgaccatcgacgtgacgccagcaccggtcccggtagcccgttggttgcccgtggtgctgctgattcagctggctgtgctgttgctgtgtacctggccaggcgtaccgccagccaGGTACACAGCAacagcaca                                                                                                                                  <  2:574169‑M2/19‑1 (MQ=255)                    ccACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAacagcacag                                                                                                                                 >  2:303418/1‑150 (MQ=255)                                       cTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGcac                                                                                                              >  2:667197/1‑150 (MQ=255)                                        tCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGGGAG‑GCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGcacc                                                                                                             >  1:732998/1‑150 (MQ=255)                                        tCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAacagcacagc                                                                                                                                <  2:545561/131‑1 (MQ=255)                                        tCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAacagcacagc                                                                                                                                >  1:545561/1‑131 (MQ=255)                                             acgtgacgccagcaccggtcccggtagcccgttggttgcccgtggtgctgctgattcagctggctgtgctgttgctgtgtaccTGGCCAGGCGTACCGCCAG‑CCAGGTaca                                                                                                                                               >  1:415535‑M1/84‑111 (MQ=255)                                             acgtgacgccagcaccggtcccggtagcccgttggttgcccgtggtgctgctgattcagctggctgtgctgttgctgtgtaccTGGCCAGGCGTACCGCCAG‑CCAGGTaca                                                                                                                                               <  2:415535‑M1/28‑1 (MQ=255)                                                   gCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGcaacca                                                                                                  >  1:288453/1‑150 (MQ=255)                                                    cTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGcaaccaa                                                                                                 <  2:772409/150‑1 (MQ=255)                                                     tttCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGcaaccaac                                                                                                >  1:765438/1‑150 (MQ=255)                                                              gTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCg                                                                                       >  2:655879/1‑150 (MQ=255)                                                               ttGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCgg                                                                                      <  1:486227/150‑1 (MQ=255)                                                                  aaCGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGAc                                                                                   <  2:551374/150‑1 (MQ=255)                                                                              gTCAGGGTGGAGGTTGTCCACTGCCTGGGCGAGACGGGTTAGGGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGt                                                                       >  2:652582/1‑150 (MQ=255)                                                                                           ttGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTCCCGCCAG‑CCAGGTACacag                                                                                                                                            <  2:825773/68‑1 (MQ=255)                                                                                           ttGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACacag                                                                                                                                            >  1:825773/1‑68 (MQ=255)                                                                                                   tGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGAGTCACGTCGATGGTCAGTGgcgc                                                  <  1:667197/150‑1 (MQ=255)                                                                                                         ggCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTc                                            <  1:303418/150‑1 (MQ=255)                                                                                                          gCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCg                                           >  1:491522/1‑150 (MQ=255)                                                                                                            cAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGc                                         <  1:515833/150‑1 (MQ=255)                                                                                                             tgtgctgttgctgtgtaccTGGCT‑GGCGGTACGCCTGGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGcc                                        <  2:574169‑M1/131‑1 (MQ=255)                                                                                                                   gTTAGCCGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGGACCACGGGCCACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTc                                  <  1:61001/150‑1 (MQ=255)                                                                                                                         gggCCGATGGCCAGGAGTAAAGACAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAAAGGGCTAACGGGAACGGTGCTGGAGTCACGTCGATGGTCAGTGGCGAGACGTCGGCCAGCTTCAGGTgc                            >  2:601563/1‑150 (MQ=255)                                                                                                                          ggCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTgcg                           >  2:697396/1‑150 (MQ=255)                                                                                                                           tgtacctggctggcggtacgcctggccaGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGt                                                                  <  2:415535‑M2/83‑1 (MQ=255)                                                                                                                           tgtacctggctggcggtacgcctggccaGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGt                                                                  >  1:415535‑M2/29‑111 (MQ=255)                                                                                                                             cGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCt                        >  1:55911/1‑150 (MQ=255)                                                                                                                                   CCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCTGGAAGt                  >  1:655879‑M1/1‑150 (MQ=255)                                                                                                                                     aGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCTGGAAGTgc                <  1:697396/150‑1 (MQ=255)                                                                                                                                             cGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTg                                                      >  1:739512/1‑104 (MQ=255)                                                                                                                                             cGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTg                                                      <  2:739512/104‑1 (MQ=255)                                                                                                                                                    ccaGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCTGGAAGTGCGCATTGGGCCCCgg  <  1:574169‑M2/147‑1 (MQ=255)                                                                                                                                                    ccaGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCTGGAAGTGCGCATTGGGCCCCgg  >  1:468688‑M2/4‑150 (MQ=255)                                                                                                                                                    ccaGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCTGGAAGTGCGCATTGGGCCCCgg  <  1:68216‑M2/147‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                   GCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAG‑CCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCCTGGAAGTGCGCATTGGGCCCCGG  >  NC_002947/2747165‑2747460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.