New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3219398	38 (1.200)	3 (0.100)	3/230	NT	7.6%	intergenic (‑98/+80)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein
	?	NC_002947	= 3219419	38 (1.290)					intergenic (‑119/+59)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein

CAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGATATAGCCGATGGCATT  >  NC_002947/3219262‑3219546                                                                                                                                         |                                                                                                                                                     cAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCa                                                                                                                                         <  1:793043/150‑1 (MQ=255)           aGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGcc                                                                                                                               <  2:659025‑M2/150‑3 (MQ=255)                gcgcTCATCGGTAGGGAGGTGCATAAGAAGAGTCCACACTGCATATCGTGCGGGCAATGTGAATGAAAACGGCTCATAGGGAACCCATTTGAGCAAATAATGGCTCAATCAAGGCTAGCACCTCGCAGCCCTGCAGGCGCTTCcctgcga                                                                                                                          <  2:89480‑M2/150‑8 (MQ=255)                       gcgGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGACCAAATTATGGCTCAATCAAGGCTCGCAGGcaagcccctgcagggctgcgacctgcgagccttga                                                                                                                   <  1:635277‑M1/149‑36 (MQ=255)                              ggAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGc                                                                                                            >  2:440519/1‑150 (MQ=255)                                 ggTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGC‑AGCGCCTGGCGCtcgcagg                                                                                                        <  2:510093/150‑7 (MQ=255)                                       tCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCt                                                                                                                                            >  1:286277/1‑109 (MQ=255)                                       tCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCt                                                                                                                                            <  2:286277/109‑1 (MQ=255)                                       tCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCgg                                                                                                   >  1:57538/1‑150 (MQ=255)                                         agaagaTTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAACGCCAGGCGCTGCCTCCCACGGTa                                                                                                 >  2:130201/1‑150 (MQ=255)                                          gaagaTTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGTCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTAt                                                                                                >  1:199764/1‑150 (MQ=255)                                             gaTTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGcc                                                                                             <  1:659025/150‑1 (MQ=255)                                              aTTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCa                                                                                            <  1:433073/150‑1 (MQ=255)                                                     acTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAgg                                                                                     <  1:380361/150‑1 (MQ=255)                                                     acTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAgg                                                                                     <  2:57538/150‑1 (MQ=255)                                                                  cGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGcaagcccctgcagggctgcgacctgcgagccttgattgag                                                                                                              >  1:249836‑M1/1‑72 (MQ=255)                                                                  cGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGcaagcccctgcagggctgcgacctgcgagccttcattgag                                                                                                              <  2:249836‑M1/112‑41 (MQ=255)                                                                  cGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGATGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAg                                                                        <  1:319671/150‑1 (MQ=255)                                                                      cATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTca                                                                    <  1:2085/150‑1 (MQ=255)                                                                        ttGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagg                                                                  >  1:11957/1‑150 (MQ=255)                                                                             aatgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGTAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcagg                                                             >  1:583013/1‑150 (MQ=255)                                                                             aatgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGTAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcagg                                                             <  2:583013/150‑1 (MQ=255)                                                                             aatgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcagg                                                             <  2:11957/150‑1 (MQ=255)                                                                              atgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTca                                                                    <  2:494580/142‑1 (MQ=255)                                                                              atgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTca                                                                    >  1:494580/1‑142 (MQ=255)                                                                                              gggCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAggg                                                                                    >  2:535847/1‑110 (MQ=255)                                                                                              gggCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAggg                                                                                    <  1:535847/110‑1 (MQ=255)                                                                                              gggCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGAc                                            >  1:299508/1‑150 (MQ=255)                                                                                              gggCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGAc                                            <  1:440519/150‑1 (MQ=255)                                                                                                gCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCt                                          >  2:485048/1‑150 (MQ=255)                                                                                                  aCCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTACAGGGGCTTGCCTGGGAGCGCCAGGCGCTGCCTCCCCCGGTATGGTAGGTCAGGGGAGGCGGCGAAGCTCATGGCAGGGTGAAGAGCACTTTGACCttt                                        >  2:17978/1‑149 (MQ=255)                                                                                                    ccATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTc                                      <  1:485048/150‑1 (MQ=255)                                                                                                     cATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCg                                     >  1:83022/1‑150 (MQ=255)                                                                                                           aGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcag                                                                   >  1:851116/1‑114 (MQ=255)                                                                                                           aGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcag                                                                   <  2:851116/114‑1 (MQ=255)                                                                                                              aaaTAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcaggg                                                            <  2:433489/118‑1 (MQ=255)                                                                                                              aaaTAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcaggg                                                            >  1:433489/1‑118 (MQ=255)                                                                                                                ataatGTCTCAATCAAGCCTCGCAGGTCGCAGACCTTCATGGACTTGCCTGCGAGCGCCAGGAGCTGCCTCCCCCTGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAACAGCACTTTGACCTTGTCGTTGACGGCaga                          <  1:17978/150‑1 (MQ=255)                                                                                                                       cTCAATGAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGcctgcgagccttgattgagccattatttgctcaaatgggtgccctatgagccgttttcattcacaatgcccg                                                         <  2:249836‑M2/112‑73 (MQ=255)                                                                                                                       cTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGcctgcgagccttgattgagccattatttgctcaaatgggtgccctatgagccgttttcattcacaatgcccg                                                         >  1:249836‑M2/1‑40 (MQ=255)                                                                                                                          aatcaaGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCagag                         >  1:571527/1‑141 (MQ=255)                                                                                                                          aatcaaGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCCGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCagag                         <  2:571527/141‑1 (MQ=255)                                                                                                                           atcaaGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGatat               >  2:222516/1‑150 (MQ=255)                                                                                                                            tcaaGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGcctgcgagccttgattgagccataatttggtcaaatgggtgccctatgagccgttttcattcacaatgcccgcacgatatgcagtgtggaatcttctgatgcacctccctaccgc              <  1:635277‑M2/150‑116 (MQ=255)                                                                                                                                 gCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGATATAGCCGa         <  1:171043/150‑1 (MQ=255)                                                                                                                                 gCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGATATAGCCGa         <  2:294790/150‑1 (MQ=255)                                                                                                                                   tCGCAGGgaagcgcctgcagggctgcgaggtgctagccttgattgagccattatttgctcaaatgggttccctatgagccgttttcattcacattgcccgcacgatatgcagtgtggactcttcttatgcacctccctaccgatgagcgc       <  2:89480‑M1/150‑144 (MQ=255)                                                                                                                                   ctgCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGATGACGGGAGCGGTGTCGATATAGCCGATg       >  1:720/3‑150 (MQ=255)                                                                                                                                        ggcaagcccctgcagggctgcgacctgcgagccttgattgagccattatttgctcaaatgggtgccctatgagccgttttcattcacaatgcccgcacgatatgcagtgtggaatcttctgatgcacctccctaccgatgagcgcctgct  <  2:659025‑M1/150‑149 (MQ=255)                                                                                                                                         |                                                                                                                                                     CAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGATATAGCCGATGGCATT  >  NC_002947/3219262‑3219546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.