New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3219398	38 (1.200)	3 (0.100)	3/230	NT	7.6%	intergenic (‑98/+80)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein
	?	NC_002947	= 3219419	38 (1.290)					intergenic (‑119/+59)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein

AGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGATATAGCCGATG  >  NC_002947/3219272‑3219541                                                                                                                                                    |                                                                                                                           aGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGcc                                                                                                                          <  2:659025‑M2/150‑3 (MQ=255)      gcgcTCATCGGTAGGGAGGTGCATAAGAAGAGTCCACACTGCATATCGTGCGGGCAATGTGAATGAAAACGGCTCATAGGGAACCCATTTGAGCAAATAATGGCTCAATCAAGGCTAGCACCTCGCAGCCCTGCAGGCGCTTCcctgcga                                                                                                                     <  2:89480‑M2/150‑8 (MQ=255)                    ggAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGc                                                                                                       >  2:440519/1‑150 (MQ=255)                       ggTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGC‑AGCGCCTGGCGCtcgcagg                                                                                                   <  2:510093/150‑7 (MQ=255)                             tCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCgg                                                                                              >  1:57538/1‑150 (MQ=255)                               agaagaTTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAACGCCAGGCGCTGCCTCCCACGGTa                                                                                            >  2:130201/1‑150 (MQ=255)                                gaagaTTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGTCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTAt                                                                                           >  1:199764/1‑150 (MQ=255)                                   gaTTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGcc                                                                                        <  1:659025/150‑1 (MQ=255)                                    aTTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCa                                                                                       <  1:433073/150‑1 (MQ=255)                                           acTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAgg                                                                                <  2:57538/150‑1 (MQ=255)                                           acTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAgg                                                                                <  1:380361/150‑1 (MQ=255)                                                        cGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGATGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAg                                                                   <  1:319671/150‑1 (MQ=255)                                                            cATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTca                                                               <  1:2085/150‑1 (MQ=255)                                                              ttGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagg                                                             >  1:11957/1‑150 (MQ=255)                                                                   aatgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGTAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcagg                                                        <  2:583013/150‑1 (MQ=255)                                                                   aatgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGTAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcagg                                                        >  1:583013/1‑150 (MQ=255)                                                                   aatgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcagg                                                        <  2:11957/150‑1 (MQ=255)                                                                    atgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTca                                                               >  1:494580/1‑142 (MQ=255)                                                                    atgaaAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTca                                                               <  2:494580/142‑1 (MQ=255)                                                                                    gggCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAggg                                                                               <  1:535847/110‑1 (MQ=255)                                                                                    gggCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAggg                                                                               >  2:535847/1‑110 (MQ=255)                                                                                    gggCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGAc                                       >  1:299508/1‑150 (MQ=255)                                                                                    gggCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGAc                                       <  1:440519/150‑1 (MQ=255)                                                                                      gCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCt                                     >  2:485048/1‑150 (MQ=255)                                                                                        aCCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTACAGGGGCTTGCCTGGGAGCGCCAGGCGCTGCCTCCCCCGGTATGGTAGGTCAGGGGAGGCGGCGAAGCTCATGGCAGGGTGAAGAGCACTTTGACCttt                                   >  2:17978/1‑149 (MQ=255)                                                                                          ccATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTc                                 <  1:485048/150‑1 (MQ=255)                                                                                           cATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCg                                >  1:83022/1‑150 (MQ=255)                                                                                                 aGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcag                                                              >  1:851116/1‑114 (MQ=255)                                                                                                 aGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcag                                                              <  2:851116/114‑1 (MQ=255)                                                                                                    aaaTAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcaggg                                                       >  1:433489/1‑118 (MQ=255)                                                                                                    aaaTAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcaggg                                                       <  2:433489/118‑1 (MQ=255)                                                                                                      ataatGTCTCAATCAAGCCTCGCAGGTCGCAGACCTTCATGGACTTGCCTGCGAGCGCCAGGAGCTGCCTCCCCCTGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAACAGCACTTTGACCTTGTCGTTGACGGCaga                     <  1:17978/150‑1 (MQ=255)                                                                                                             cTCAATGAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGcctgcgagccttgattgagccattatttgctcaaatgggtgccctatgagccgttttcattcacaatgcccg                                                    <  2:249836‑M2/112‑73 (MQ=255)                                                                                                             cTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGcctgcgagccttgattgagccattatttgctcaaatgggtgccctatgagccgttttcattcacaatgcccg                                                    >  1:249836‑M2/1‑40 (MQ=255)                                                                                                                aatcaaGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCagag                    >  1:571527/1‑141 (MQ=255)                                                                                                                aatcaaGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCCGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCagag                    <  2:571527/141‑1 (MQ=255)                                                                                                                 atcaaGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGatat          >  2:222516/1‑150 (MQ=255)                                                                                                                  tcaaGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGcctgcgagccttgattgagccataatttggtcaaatgggtgccctatgagccgttttcattcacaatgcccgcacgatatgcagtgtggaatcttctgatgcacctccctaccgc         <  1:635277‑M2/150‑116 (MQ=255)                                                                                                                       gCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGATATAGCCGa    <  1:171043/150‑1 (MQ=255)                                                                                                                       gCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGATATAGCCGa    <  2:294790/150‑1 (MQ=255)                                                                                                                         ctgCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGATGACGGGAGCGGTGTCGATATAGCCGATg  >  1:720/3‑150 (MQ=255)                                                                                                                                        cTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcag                                                         <  2:586943/80‑1 (MQ=255)                                                                                                                                        cTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTcagggcag                                                         >  1:586943/1‑80 (MQ=255)                                                                                                                                                    |                                                                                                                           AGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGTCGCAGCCCTGCAGGGGCTTGCCTGCGAGCGCCAGGCGCTGCCTCCCCCGGTATGCCAGGTCAGGGGAGGCGGCGAAGCTCAGGGCAGGGTGAAGAGCACTTTGACCTTGTCGTTGACGGCAGAGGTGTCGATATAGCCGATG  >  NC_002947/3219272‑3219541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.