New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3632310 =	27 (0.850)	4 (0.130)	4/238	NT	13.1%	coding (1161/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	3632380 =	27 (0.890)					coding (1231/1368 nt)	PP_5590	hypothetical protein

GACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAA  >  NC_002947/3632161‑3632442                                                                                                                                                      |                                                                                                                                     gACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAg                                                                                                                                      <  2:746597/150‑1 (MQ=255)     cgcctgctcagcgcacgccctagccggccatggcgtcggcggtgaacaccgagtccttgtagggcggcacgatgcggtactgttcgttcttgcctgcgaacaggtcaccggcgaaccaggcaccggagagcaggtcgtagaagccGTTgg                                                                                                                                  >  2:440557‑M1/146‑150 (MQ=255)          cGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAg                                                                                                                             <  1:158191/150‑1 (MQ=255)                    tGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGa                                                                                                                   <  1:844541/150‑1 (MQ=255)                      cACCGTGTGTGGGCGGTGCAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGAcc                                                                                                                 >  2:762769/1‑150 (MQ=255)                         cGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCaa                                                                                                                              >  2:818545/1‑134 (MQ=255)                         cGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCaa                                                                                                                              <  1:818545/134‑1 (MQ=255)                               tgtttggtgcAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCggtg                                                                                                        <  2:819803/146‑1 (MQ=255)                               tgggtggTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCggtg                                                                                                        <  2:424603/150‑1 (MQ=255)                                  gtggtgGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGgtggtg                                                                                                     <  2:442335/150‑1 (MQ=255)                                                   caccgagtccttgtagggcggcacgatgcggtactgttcgttcttgcctgcgaacaggtcaccggcgaaccaggcaccggagagcaggtcgtagaagccGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCggg                                                                                    <  2:24510‑M1/51‑1 (MQ=255)                                                       gaTGGCTAGCGCCATGCGATGCGGCGTAGCACTCACTACCTCGACGAAGACACCGTGGCTGCCGTGCTGCGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCgtg                                                                                <  2:127309/149‑1 (MQ=255)                                                        aTGGCCAGCGCCATGTGATGCCGCGTAGCACGTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCgtgg                                                                               >  2:526593/1‑150 (MQ=255)                                                                 gcCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGa                                                                      <  1:571680/150‑1 (MQ=255)                                                                       gcacgatgcggtactgttcgttcttgcctgcgaacaggtcaccggcgaaccaggcaccggagagcaggtcgtagaagccGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACg                                                                >  1:24510‑M1/80‑150 (MQ=255)                                                                             cgcgTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCt                                                          >  1:537890/1‑150 (MQ=255)                                                                                  aGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGAc                                                     <  1:265020/150‑1 (MQ=255)                                                                                        tactacCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGa                                                                      >  2:253019/1‑127 (MQ=255)                                                                                        tactacCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGa                                                                      <  1:253019/127‑1 (MQ=255)                                                                                         actacCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCgtggt                                                                              <  2:296745/118‑1 (MQ=255)                                                                                         actacCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCgtggt                                                                              >  1:296745/1‑118 (MQ=255)                                                                                          ctacCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTc                                                           >  1:358849/1‑136 (MQ=255)                                                                                          ctacCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTc                                                           <  2:358849/136‑1 (MQ=255)                                                                                            acCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCg                                           <  2:31250/150‑1 (MQ=255)                                                                                                      aGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGtt                                 <  2:537890/150‑1 (MQ=255)                                                                                                           ccTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGt                                  <  2:628428/144‑1 (MQ=255)                                                                                                           ccTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGt                                  >  1:628428/1‑144 (MQ=255)                                                                                                                  ggcgaaccaggcaccggagagcaggtcgtagaagccGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAAc                                                                 >  1:592049‑M1/37‑106 (MQ=255)                                                                                                                  ggcgaaccaggcaccggagagcaggtcgtagaagccGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAAc                                                                 <  2:592049‑M1/70‑1 (MQ=255)                                                                                                                        gCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAGGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGc               >  2:493254/1‑150 (MQ=255)                                                                                                                         cTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCa              <  1:526593/150‑1 (MQ=255)                                                                                                                          tGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAg             >  2:819333/1‑150 (MQ=255)                                                                                                                                     tATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAgaacgaa  >  2:703158/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                     GACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAA  >  NC_002947/3632161‑3632442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.