New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3632310 =	27 (0.850)	4 (0.130)	4/238	NT	13.1%	coding (1161/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	3632380 =	27 (0.890)					coding (1231/1368 nt)	PP_5590	hypothetical protein

TGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTG  >  NC_002947/3632231‑3632529                                                                                                                                                      |                                                                                                                                                        gcacgatgcggtactgttcgttcttgcctgcgaacaggtcaccggcgaaccaggcaccggagagcaggtcgtagaagccGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACg                                                                                                                                                         >  1:24510‑M1/80‑150 (MQ=255)       cgcgTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCt                                                                                                                                                   >  1:537890/1‑150 (MQ=255)            aGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGAc                                                                                                                                              <  1:265020/150‑1 (MQ=255)                    ctacCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTc                                                                                                                                                    <  2:358849/136‑1 (MQ=255)                    ctacCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTc                                                                                                                                                    >  1:358849/1‑136 (MQ=255)                      acCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCg                                                                                                                                    <  2:31250/150‑1 (MQ=255)                                aGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGtt                                                                                                                          <  2:537890/150‑1 (MQ=255)                                     ccTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGt                                                                                                                           <  2:628428/144‑1 (MQ=255)                                     ccTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGt                                                                                                                           >  1:628428/1‑144 (MQ=255)                                                  gCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAGGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGc                                                                                                        >  2:493254/1‑150 (MQ=255)                                                   cTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCa                                                                                                       <  1:526593/150‑1 (MQ=255)                                                    tGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAg                                                                                                      >  2:819333/1‑150 (MQ=255)                                                               tATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAgaacgaa                                                                                           >  2:703158/1‑150 (MQ=255)                                                                               cgttggtcaaggtcaccacgcccggcaggtcaggcagcaccaccggcgaggtccagaccaccttggccaacGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTgc                                                                           >  1:24510‑M2/72‑150 (MQ=255)                                                                                gttggtcaaggtcaccacgcccggcaggtcaggcagcaccaccggcgaggtccagaccaccttggccaacGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGcc                                                                                                                      >  1:592049‑M2/71‑106 (MQ=255)                                                                                gttggtcaaggtcaccacgcccggcaggtcaggcagcaccaccggcgaggtccagaccaccttggccaacGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGcc                                                                                                                      <  2:592049‑M2/36‑1 (MQ=255)                                                                                    GCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTgccgc                                                                        >  1:64943‑M1/1‑148 (MQ=255)                                                                                    GCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTgccgc                                                                        <  2:64943‑M1/148‑1 (MQ=255)                                                                                      cAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTa                                                                    >  1:215500/1‑150 (MQ=255)                                                                                       aaGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTAc                                                                   >  1:228478/1‑150 (MQ=255)                                                                                           tggtCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAgg                                                               >  2:765789/1‑150 (MQ=255)                                                                                               cTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCg                                                                                                                     >  1:256835/1‑92 (MQ=255)                                                                                               cTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCg                                                                                                                     <  2:256835/92‑1 (MQ=255)                                                                                                 ggACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGt                                                                                                                                  <  2:222083/77‑1 (MQ=255)                                                                                                 ggACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGt                                                                                                                                  >  1:222083/1‑77 (MQ=255)                                                                                                   cccggcaggtcaggcagcaccaccggcgaggtccagaccaccttggccaacGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGgtg                                                       <  2:24510‑M2/99‑1 (MQ=255)                                                                                                                tgctgcCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACg                                          >  1:798017/1‑150 (MQ=255)                                                                                                                  ctgcCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGcc                                        >  1:672998/1‑150 (MQ=255)                                                                                                                     ccTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATg                                     >  2:362713/1‑150 (MQ=255)                                                                                                                       tGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGc                                   >  2:805610/1‑150 (MQ=255)                                                                                                                               cGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGg                         >  1:493254‑M2/1‑149 (MQ=255)                                                                                                                                       gtgACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTgcgc                 >  2:255764/1‑150 (MQ=255)                                                                                                                                        tgACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCt                <  2:701301/150‑1 (MQ=255)                                                                                                                                         gACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATc                                                                               >  2:59310/1‑88 (MQ=255)                                                                                                                                         gACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATc                                                                               <  1:59310/88‑1 (MQ=255)                                                                                                                                                 ccaacGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCTAGGGCGTGCGCTGAGCAGgcg       >  2:440557‑M2/6‑150 (MQ=255)                                                                                                                                                      ggCTTCTACGACCGGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCTCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCCTCGCC‑‑GGCCATGGCGTCggcggtgaacaccgagtccttgta  >  1:762769‑M2/1‑126 (MQ=255)                                                                                                                                                      |                                                                                                                                                        TGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTGGGCGAGCGCTATGACGCCCGCAACCAGTTGGCCAAGGTGGTCTGGACCTCGCCGGTGGTGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTG  >  NC_002947/3632231‑3632529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.