New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3930704 =	26 (0.820)	3 (0.100)	3/240	NT	12.7%	coding (448/1293 nt)	PP_5603	FAD dependent oxidoreductase
	?	NC_002947	3930745 =	16 (0.520)					coding (407/1293 nt)	PP_5603	FAD dependent oxidoreductase

CTCCTGGGTGACTTGCCAGTAACAGCGGCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCAC  >  NC_002947/3930555‑3930839                                                                                                                                                      |                                                                                                                                        ctcctGGGTGACTTGCCAGTAACAGCGGCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCg                                                                                                                                         <  2:832017/150‑1 (MQ=255) ctcctGGGTGACTTGCCAGTAACAGCGGCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCg                                                                                                                                         <  2:379764/150‑1 (MQ=255)  tcctGGGTGACTTGCCAGTAACAGCGGCCATCTACCAGCCGTGCACTCCACGACACGACATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCgg                                                                                                                                        >  1:106134/1‑150 (MQ=255)   cgaccggcaacgttttgaccaagcgctgcgcgaagaccttcagcgcgcaggcgtgagtgtggtcgaggggcgggtgcgtgaggtcgtgcaggggggcggtcatcatgtgcgcctggacgatgggcaggtgctgaccgctgatttcctGGt                                                                                                                                       >  2:666590‑M1/148‑150 (MQ=255)             ttGCCAGTAACAGCGGCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAg                                                                                                                             >  1:136098/1‑150 (MQ=255)                 cAGTAACAGCGGCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGt                                                                                                                         >  1:404310/1‑150 (MQ=255)                   gTAACAGCGGCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGc                                                                                                                       <  1:208181/150‑1 (MQ=255)                          cGGCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTCCCGGCCCACGCAGGCGGTGGTCGTTCAGGGGTGCCTGACgg                                                                                                                <  2:847070/150‑1 (MQ=255)                           ggCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggc                                                                                                               <  2:709913/150‑1 (MQ=255)                             ccATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggcct                                                                                                             <  1:6628/150‑1 (MQ=255)                              cATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggcctc                                                                                                            >  1:25937/1‑150 (MQ=255)                              cATCTTCCAGCCGTGCCATCCACGCCCAGCCATCATCCAAGCTCTCCACCGCCGACGCAGGCGCACAGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCCGGCCGTCTGCGGCCAGGGGTGCCTGACgggctc                                                                                                            >  1:158487/1‑150 (MQ=255)                               aTCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGTGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggcctcg                                                                                                           <  1:232151/150‑1 (MQ=255)                               aTCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGCATCCACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggcctcg                                                                                                           <  1:656072/150‑1 (MQ=255)                                 cTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggcctcggg                                                                                                         <  2:810549/150‑1 (MQ=255)                                     cAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggcctcgggcctc                                                                                                     <  2:136098/150‑1 (MQ=255)                                              cgcgcaggcgtgagtgtggtcgaggggcgggtgcgtgaggtcgtgcaggggggcggtcatcatgtgcgcctggacgatgggcaggtgctgaccgctgatttcctGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGaa                                                                                            >  1:364967‑M1/105‑150 (MQ=255)                                               aTCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGaaa                                                                                           <  2:431612/150‑1 (MQ=255)                                                     gCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCg                                                                                     >  2:31708/1‑150 (MQ=255)                                                      cccAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCgg                                                                                    <  2:362224/150‑1 (MQ=255)                                                       ccAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGAGTGCATGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGt                                                                                   >  1:183560/1‑150 (MQ=255)                                                         aGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCa                                                                                 <  2:25937/150‑1 (MQ=255)                                                                          tcCACCGCCGACGCAGGCGCACCGGGGCTACCCTGTCAGACATTGAGCAGGCTGACCGTTTCCTGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTc                                                                                  <  2:802683/132‑1 (MQ=255)                                                                          tcCACCGCCGACGCAGGCGCACCGGGGCTACCCTGTCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTc                                                                                  >  1:802683/1‑132 (MQ=255)                                                                            cACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggcct                                                                                                             >  2:499796/1‑103 (MQ=255)                                                                            cACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACggcct                                                                                                             <  1:499796/103‑1 (MQ=255)                                                                                                    gCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTg                                      <  2:344193/150‑1 (MQ=255)                                                                                                     cTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCCACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGc                                     <  2:106134/150‑1 (MQ=255)                                                                                                              cAGACACTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCACCTGCACGACCTCa                            <  1:109499/150‑1 (MQ=255)                                                                                                                                aggtgctgaccgctgatttcctGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCAc                                                                             >  2:115686‑M1/23‑83 (MQ=255)                                                                                                                                aggtgctgaccgctgatttcctGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCAc                                                                             <  1:115686‑M1/61‑1 (MQ=255)                                                                                                                                  cGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTGGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACcac        >  2:554606/1‑150 (MQ=255)                                                                                                                                        cGGCCCACGCAGGCGGTCTGCGGCCAGGGGTTCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCAc  >  1:367105/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                        CTCCTGGGTGACTTGCCAGTAACAGCGGCCATCTTCCAGCCGTGCCATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCAC  >  NC_002947/3930555‑3930839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.