New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3930704 =	26 (0.820)	3 (0.100)	3/240	NT	12.7%	coding (448/1293 nt)	PP_5603	FAD dependent oxidoreductase
	?	NC_002947	3930745 =	16 (0.520)					coding (407/1293 nt)	PP_5603	FAD dependent oxidoreductase

CATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCG  >  NC_002947/3930600‑3930891                                                                                                                                                  |                                                                                                                                                   cgcgcaggcgtgagtgtggtcgaggggcgggtgcgtgaggtcgtgcaggggggcggtcatcatgtgcgcctggacgatgggcaggtgctgaccgctgatttcctGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGaa                                                                                                                                                >  1:364967‑M1/105‑150 (MQ=255)  aTCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGaaa                                                                                                                                               <  2:431612/150‑1 (MQ=255)        gCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCg                                                                                                                                         >  2:31708/1‑150 (MQ=255)         cccAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCgg                                                                                                                                        <  2:362224/150‑1 (MQ=255)          ccAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGAGTGCATGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGt                                                                                                                                       >  1:183560/1‑150 (MQ=255)            aGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCa                                                                                                                                     <  2:25937/150‑1 (MQ=255)                             tcCACCGCCGACGCAGGCGCACCGGGGCTACCCTGTCAGACATTGAGCAGGCTGACCGTTTCCTGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTc                                                                                                                                      <  2:802683/132‑1 (MQ=255)                             tcCACCGCCGACGCAGGCGCACCGGGGCTACCCTGTCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTc                                                                                                                                      >  1:802683/1‑132 (MQ=255)                                                       gCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTg                                                                                          <  2:344193/150‑1 (MQ=255)                                                        cTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCCACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGc                                                                                         <  2:106134/150‑1 (MQ=255)                                                                 cAGACACTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCACCTGCACGACCTCa                                                                                <  1:109499/150‑1 (MQ=255)                                                                                   aggtgctgaccgctgatttcctGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCAc                                                                                                                                 <  1:115686‑M1/61‑1 (MQ=255)                                                                                   aggtgctgaccgctgatttcctGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCAc                                                                                                                                 >  2:115686‑M1/23‑83 (MQ=255)                                                                                     gtgctgaccgctgatttcctggtcgaggcccgaggccgtcaggcacccctggccgcagaccAGGAAATCAGCGGTCAGCACCt                                                                                                                               >  2:115686‑M2/62‑83 (MQ=255)                                                                                     gtgctgaccgctgatttcctggtcgaggcccgaggccgtcaggcacccctggccgcagaccAGGAAATCAGCGGTCAGCACCt                                                                                                                               <  1:115686‑M2/22‑1 (MQ=255)                                                                                     cGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTGGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACcac                                                            >  2:554606/1‑150 (MQ=255)                                                                                           cGGCCCACGCAGGCGGTCTGCGGCCAGGGGTTCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCAc                                                      >  1:367105/1‑150 (MQ=255)                                                                                                    ttcctggtcgaggcccgaggccgtcaggcacccctggccgcagaccAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTgcgcg                                             >  1:364967‑M2/47‑150 (MQ=255)                                                                                                          atccgcgcCCAGGGGTGCTTGACGGCCTCTGGCCTCGCCCAGGAAATCAGGGGTTAGCCCCTGCCCATCGTCCAGTCGCACATGATTACCGCCCCCCTGCACGACTTCACCCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAg                                       <  2:183560/146‑1 (MQ=255)                                                                                                                                     tcgggcctcgACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCTCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTg                     <  2:542591/141‑1 (MQ=255)                                                                                                                                     tcgggcctcgACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTg                     >  1:542591/1‑141 (MQ=255)                                                                                                                                       gggcctcgACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGtt          <  2:404310/150‑1 (MQ=255)                                                                                                                                         gcctcgACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGc        >  2:80626/1‑150 (MQ=255)                                                                                                                                             cgACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGt    <  1:31708/150‑1 (MQ=255)                                                                                                                                               accAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCg  >  2:666590‑M2/4‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CATCCACGCCCAGCCATCCTCCAGGCTCTCCACCGCCGACGCAGGCGCACCGGGGCTACCCTGCCAGACATTGAGCAGGCTGACCGTTTCCGGCCCACGCAGGCGGTCTGCGGCCAGGGGTGCCTGACGGCCTCGGGCCTCGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCG  >  NC_002947/3930600‑3930891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.