New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4016697 =	23 (0.730)	4 (0.140)	4/226	NT	13.6%	coding (555/1410 nt)	PP_3544	GntR family transcriptional regulator
	?	NC_002947	4016768 =	30 (1.040)					coding (626/1410 nt)	PP_3544	GntR family transcriptional regulator

CGCATGGTGGTGACCGATCTGTCCCCCGGTAACCCGCAGTTGCGCCGGCAGATAGCCCTGCGCTACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGC  >  NC_002947/4016557‑4016843                                                                                                                                             |                                                                                                                                                   caccgggttctggaaattggtcatgcaccacacggcctttaccgggtgcatttccagggtctgcgccagcacccccaggtccatgccctcgcgcgggtgcacggggatttccacagccttgagcttgagccgctccagcaCCTgcaggca                                                                                                                                           <  1:228672‑M1/10‑1 (MQ=255)          gtgACCGATCTGTCCCCCGGTAACCCGCAGTTGCGCCGGCAGATAGCCCTGCGCTACATGGTCGGTGGGCTGATACCATGGTTTCAATGGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAg                                                                                                                                  >  1:787221/1‑150 (MQ=255)              ccGATCTGTCCCCCGGTAACCCGCAGTTGCGCCGGCAGATAGCCCTGCGCTACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCgg                                                                                                                              <  2:664190/150‑1 (MQ=255)               cGATCTGTCCCCCGGTAACCCGCAGTTGCGCCGGCAGATAGCCCTGCGCTACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCggg                                                                                                                             <  1:500747/150‑1 (MQ=255)                         gcaccacacggcctttaccgggtgcatttccagggtctgcgccagcacccccaggtccatgccctcgcgcgggtgcacgggggtttccacagccttgagcttgagccgctccagcaCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTc                                                                                                                   <  2:730050‑M1/34‑1 (MQ=255)                                        ttGCGCCGGCAGATAGCCCTGCGCTACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCg                                                                                                    <  2:190178/150‑1 (MQ=255)                                                          cTGCGCTACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGcctgcctg                                                                                  >  1:558975/1‑150 (MQ=255)                                                           ggcgcTATAGGGTCGGTGGGCTGATGCTTCCGGTGGAAGAGATGCTGATCACCAACGGCGCACTGGAGGCCCTAAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCATCTATGCctgcctgc                                                                                 >  2:228672/2‑150 (MQ=255)                                                               gcgccagcacccccaggtccatgccctcgcgcgggtgcacgggggtttccacagccttgagcttgagccgctccagcaCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGt                                                                             >  1:730050‑M1/79‑150 (MQ=255)                                                                tACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTgcaggcacagg                                                                                                                                       <  1:237416/91‑5 (MQ=255)                                                                tACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTgcaggcacagg                                                                                                                                       >  2:237416/1‑87 (MQ=255)                                                                   aTGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCATTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTg                                                                         <  1:292146/150‑1 (MQ=255)                                                                      gTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAg                                                                      >  2:201306/1‑150 (MQ=255)                                                                      gTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAg                                                                      >  1:772020/1‑150 (MQ=255)                                                                         ccccaggtccatgccctcgcgcgggtgcacggggatttccacagccttgagcttgagccgctccagcaCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTg                                                                         >  2:67273‑M1/69‑144 (MQ=255)                                                                         ccccaggtccatgccctcgcgcgggtgcacggggatttccacagccttgagcttgagccgctccagcaCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTg                                                                         <  1:67273‑M1/76‑1 (MQ=255)                                                                                      tgcCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAgg                                                      >  2:626606/1‑150 (MQ=255)                                                                                              gAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGaa                                              >  1:642641/1‑150 (MQ=255)                                                                                                    ctgctgATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATcccc                                        <  2:787221/150‑1 (MQ=255)                                                                                                    ctgctgATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATcccc                                        <  1:201306/150‑1 (MQ=255)                                                                                                      gctgATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGt                                      <  1:27885/150‑1 (MQ=255)                                                                                                      cggggatttccacagccttgagcttgagccgctccagcacc                                                                                                                                                   >  2:97431‑M1/40‑41 (MQ=255)                                                                                                      cggggatttccacagccttgagcttgagccgctccagcacc                                                                                                                                                   <  1:97431‑M1/2‑1 (MQ=255)                                                                                                          aTCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCAc                                  >  2:782223/1‑150 (MQ=255)                                                                                                               cAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGt                                      <  2:659578/141‑1 (MQ=255)                                                                                                               cAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGt                                      >  1:659578/1‑141 (MQ=255)                                                                                                                                 ccTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCAt                    >  2:307464/1‑141 (MQ=255)                                                                                                                                 ccTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCAt                    <  1:307464/141‑1 (MQ=255)                                                                                                                                 ccTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTggg           >  2:739234/1‑150 (MQ=255)                                                                                                                                  cTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTgggg          <  2:558975/150‑1 (MQ=255)                                                                                                                                        cTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTg    >  1:376128/1‑150 (MQ=255)                                                                                                                                          gtgCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCAGCGCGAGGGCATGGACCTGGGGGTGCTGgc  <  1:626606/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   CGCATGGTGGTGACCGATCTGTCCCCCGGTAACCCGCAGTTGCGCCGGCAGATAGCCCTGCGCTACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGC  >  NC_002947/4016557‑4016843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.