New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4016697 =	23 (0.730)	4 (0.140)	4/226	NT	13.6%	coding (555/1410 nt)	PP_3544	GntR family transcriptional regulator
	?	NC_002947	4016768 =	30 (1.040)					coding (626/1410 nt)	PP_3544	GntR family transcriptional regulator

CTACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAGGCCGTGTGGTGCATGACCAATTTCCAGAACCCGGTG  >  NC_002947/4016619‑4016907                                                                                                                                                      |                                                                                                                                            gcgccagcacccccaggtccatgccctcgcgcgggtgcacgggggtttccacagccttgagcttgagccgctccagcaCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGt                                                                                                                                             >  1:730050‑M1/79‑150 (MQ=255)     aTGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCATTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTg                                                                                                                                         <  1:292146/150‑1 (MQ=255)        gTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAg                                                                                                                                      >  2:201306/1‑150 (MQ=255)        gTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAg                                                                                                                                      >  1:772020/1‑150 (MQ=255)           ccccaggtccatgccctcgcgcgggtgcacggggatttccacagccttgagcttgagccgctccagcaCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTg                                                                                                                                         <  1:67273‑M1/76‑1 (MQ=255)           ccccaggtccatgccctcgcgcgggtgcacggggatttccacagccttgagcttgagccgctccagcaCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTg                                                                                                                                         >  2:67273‑M1/69‑144 (MQ=255)                        tgcCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAgg                                                                                                                      >  2:626606/1‑150 (MQ=255)                                gAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGaa                                                                                                              >  1:642641/1‑150 (MQ=255)                                      ctgctgATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATcccc                                                                                                        <  2:787221/150‑1 (MQ=255)                                      ctgctgATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATcccc                                                                                                        <  1:201306/150‑1 (MQ=255)                                        gctgATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGt                                                                                                      <  1:27885/150‑1 (MQ=255)                                            aTCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCAc                                                                                                  >  2:782223/1‑150 (MQ=255)                                                 cAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGt                                                                                                      <  2:659578/141‑1 (MQ=255)                                                 cAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGt                                                                                                      >  1:659578/1‑141 (MQ=255)                                                                   ccTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCAt                                                                                    >  2:307464/1‑141 (MQ=255)                                                                   ccTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCAt                                                                                    <  1:307464/141‑1 (MQ=255)                                                                   ccTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTggg                                                                           >  2:739234/1‑150 (MQ=255)                                                                    cTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTgggg                                                                          <  2:558975/150‑1 (MQ=255)                                                                          cagcacctgcaggcaggcatagaaggccggggcctcgatggcgaccagatcgcccggctgggtcactgcctgcaggTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTgggg                                                                          >  2:67273‑M2/77‑144 (MQ=255)                                                                          cagcacctgcaggcaggcatagaaggccggggcctcgatggcgaccagatcgcccggctgggtcactgcctgcaggTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTgggg                                                                          <  1:67273‑M2/68‑1 (MQ=255)                                                                          cTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTg                                                                    >  1:376128/1‑150 (MQ=255)                                                                            gtgCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCAGCGCGAGGGCATGGACCTGGGGGTGCTGgc                                                                  <  1:626606/150‑1 (MQ=255)                                                                              acctgcaggcaggcatagaaggccggggcctcgatggcgaccagatcgcccggctgggtcactgcctgcaggTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAACCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGgcgc                                                                >  1:730050‑M2/73‑150 (MQ=255)                                                                                   CAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGAcc                                                           >  2:772020‑M1/1‑150 (MQ=255)                                                                                               cAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCAc                                               >  1:325022/1‑150 (MQ=255)                                                                                                aGCCGGGCAATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCAcc                                              <  2:719051/150‑1 (MQ=255)                                                                                                    gggCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGt                                          >  1:782533/1‑150 (MQ=255)                                                                                                          tCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAGGc                                    >  1:191491/1‑150 (MQ=255)                                                                                                            tGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGt                                                                                                      <  2:11905/82‑1 (MQ=255)                                                                                                            tGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGt                                                                                                      >  1:11905/1‑82 (MQ=255)                                                                                                            tGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAGGCCg                                  >  1:550688/1‑150 (MQ=255)                                                                                                                   cATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAAt                                                   >  2:234928/1‑126 (MQ=255)                                                                                                                   cATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAAt                                                   <  1:234928/126‑1 (MQ=255)                                                                                                                    gaccagatcgcccggctgggtcactgcctgcaggTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAACCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAGGCCGTGTGGTGc                          <  2:730050‑M2/116‑1 (MQ=255)                                                                                                                           ccccGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGACGCAGACCCTGGAAATGCACCCGGTAAAGGCCGTGTGGTGCATGACCa                   >  2:84474/1‑150 (MQ=255)                                                                                                                                gCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAGGCCGTGTGGTGCATGACCAATTTc              >  1:527523/1‑150 (MQ=255)                                                                                                                                  cTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAg                                      >  2:410559/1‑124 (MQ=255)                                                                                                                                  cTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAg                                      <  1:410559/124‑1 (MQ=255)                                                                                                                                     cTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAGGCCGTGTGGTGCATGACCACTTTCCAGaa         >  1:359782/1‑150 (MQ=255)                                                                                                                                            tgcctgcaggTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAGGCCGTGTGGTGCATGACCAATTTCCAGAACCCggtg  <  1:228672‑M2/140‑1 (MQ=255)                                                                                                                                                    ggTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCg                                                                                                       <  1:97431‑M2/39‑1 (MQ=255)                                                                                                                                                    ggTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCg                                                                                                       >  2:97431‑M2/3‑41 (MQ=255)                                                                                                                                                      |                                                                                                                                            CTACATGGTCGGTGGGCTGATGCTGCCGATGGAAGAGCTGCTGATCACCAACGGCGCACTGGAGGCCCTGAACCTGTGCCTGCAGGCAGTGACCCAGCCGGGCGATCTGGTCGCCATCGAGGCCCCGGCCTTCTATGCCTGCCTGCAGGTGCTGGAGCGGCTCAAGCTCAAGGCTGTGGAAATCCCCGTGCACCCGCGCGAGGGCATGGACCTGGGGGTGCTGGCGCAGACCCTGGAAATGCACCCGGTAAAGGCCGTGTGGTGCATGACCAATTTCCAGAACCCGGTG  >  NC_002947/4016619‑4016907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.