New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4280116	44 (1.390)	4 (0.130)	4/240	NT	9.2%	coding (1272/1434 nt)	PP_3750	GntR family transcriptional regulator
	?	NC_002947	= 4280140	36 (1.170)					coding (1296/1434 nt)	PP_3750	GntR family transcriptional regulator

CCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTG  >  NC_002947/4279972‑4280263                                                                                                                                                 |                                                                                                                                                    ccACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCt                                                                                                                                                >  2:694647/1‑150 (MQ=255)   aCGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTcg                                                                                                                                              >  2:299056/1‑150 (MQ=255)         tCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCt                                                                                                                                                    <  1:114986‑M1/138‑2 (MQ=255)         tCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCt                                                                                                                                                    >  2:114986‑M1/1‑137 (MQ=255)          cTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTaa                                                                                                                                       <  1:473725/150‑1 (MQ=255)           ggatgcgcTCGCGGCGTGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATATGGAGCTGTTGGCCAACCTCGCGCGTAag                                                                                                                                      >  2:235232/5‑150 (MQ=255)             cAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggt                                                                                                                                    >  1:694825/1‑150 (MQ=255)                       cgcgAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAggc                                                                                                                          >  1:694647‑M2/1‑147 (MQ=255)                            gcgcATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTa                                                                                                                     <  1:533517/150‑1 (MQ=255)                                aTCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCa                                                                                                                 >  2:257760/1‑150 (MQ=255)                                   cTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCAc                                                                                                                >  2:448202/1‑148 (MQ=255)                                   cTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCAc                                                                                                                <  1:448202/148‑1 (MQ=255)                                      gcgcgcCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCa                                                                                                           <  2:726916/150‑1 (MQ=255)                                      gcgcgcCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCa                                                                                                           <  1:679554/150‑1 (MQ=255)                                                         tGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGCTGTGGAGCTTTGGGCCAACCTCGCGCGTAAGGTAGAGGTACGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCAc                                                                                        >  1:103833/1‑150 (MQ=255)                                                         tGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCAc                                                                                        <  2:694825/150‑1 (MQ=255)                                                           gCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggta                                                                                                                                   >  2:100367/1‑105 (MQ=255)                                                           gCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggta                                                                                                                                   <  1:100367/105‑1 (MQ=255)                                                                          gcCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagag                                                                                                                                >  2:425621/1‑93 (MQ=255)                                                                          gcCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagag                                                                                                                                <  1:425621/93‑1 (MQ=255)                                                                           ccATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGt                                                                                                                      <  1:376974/102‑1 (MQ=255)                                                                           ccATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGt                                                                                                                      >  2:376974/1‑102 (MQ=255)                                                                           ccATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTAt                                                                      <  1:171135/150‑1 (MQ=255)                                                                             aTCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTgg                                                                                                             <  2:698235/109‑1 (MQ=255)                                                                             aTCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTgg                                                                                                             >  1:698235/1‑109 (MQ=255)                                                                              tCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCAccc                                                                                                        >  1:374886/1‑113 (MQ=255)                                                                              tCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCAccc                                                                                                        <  2:374886/113‑1 (MQ=255)                                                                              tCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGa                                                                   <  1:257760/150‑1 (MQ=255)                                                                                cccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTGACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATg                                                                 >  1:825141/1‑150 (MQ=255)                                                                                 ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagag                                                                                                                                >  1:703807/1‑86 (MQ=255)                                                                                 ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAaggtagag                                                                                                                                <  2:703807/86‑1 (MQ=255)                                                                                 ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATgg                                                                <  1:299056/150‑1 (MQ=255)                                                                                 ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATgg                                                                >  1:169227/1‑150 (MQ=255)                                                                                               ttCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCtacctctaccttacgcgcgaggttggccaacagctccacatccac                                                                                                        <  2:19219‑M1/96‑46 (MQ=255)                                                                                               ttCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCtacctctacattacgcgcgaggttggccaacagctccacatccac                                                                                                        >  1:19219‑M1/1‑51 (MQ=255)                                                                                               ttCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTACGCCTGCCGTCCCGGGGACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                  >  1:619092/1‑150 (MQ=255)                                                                                               ttCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCAAACCCCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                  >  1:321013/1‑150 (MQ=255)                                                                                                 ccACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTg                                                                                                              <  1:103524/88‑1 (MQ=255)                                                                                                 ccACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTg                                                                                                              >  2:103524/1‑88 (MQ=255)                                                                                                              ttGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATc                                   <  1:602864/150‑1 (MQ=255)                                                                                                                ggCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCtt                                                            >  2:85807/1‑123 (MQ=255)                                                                                                                ggCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCtt                                                            <  1:85807/123‑1 (MQ=255)                                                                                                                atccACCCCGGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGa                                 >  2:27332/3‑150 (MQ=255)                                                                                                                      ccccGGGGTGGATGTGGAGCTGTTGGTCtacctctaccttacgcgcgaggttggcc                                                                                                                         >  2:202631‑M1/1‑28 (MQ=255)                                                                                                                      ccccGGGGTGGATGTGGAGCTGTTGGTCtacctctaccttacgcgcgaggttggcc                                                                                                                         <  1:202631‑M1/56‑29 (MQ=255)                                                                                                                       cccGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGAAagggc                                                                                                                                   <  2:125383/45‑3 (MQ=255)                                                                                                                       cccGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGAAagggc                                                                                                                                   >  1:125383/1‑43 (MQ=255)                                                                                                                             gTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAATGTAGAGGTAggccaacagctccacatccaccccgggggtggccaaggcactgaggtggaa                                                                          >  1:19219‑M2/1‑45 (MQ=255)                                                                                                                             gTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAggccaacagctccacatccaccccgggggtggccaaggcactgaggtggaa                                                                          <  2:19219‑M2/96‑52 (MQ=255)                                                                                                                                gATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCgg                 <  2:786579/150‑1 (MQ=255)                                                                                                                                  tgtgGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                  <  2:176045/115‑1 (MQ=255)                                                                                                                                  tgtgGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                  >  1:176045/1‑115 (MQ=255)                                                                                                                                       aGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGgc                                                        <  1:717830/104‑1 (MQ=255)                                                                                                                                       aGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGgc                                                        >  2:717830/1‑104 (MQ=255)                                                                                                                                              ggCCAACCTCGCGCGTAAGGTAGAGGTAgaccaacagctccacatccaccccgggg                                                                                                 <  1:202631‑M2/56‑29 (MQ=255)                                                                                                                                              ggCCAACCTCGCGCGTAAGGTAGAGGTAgaccaacagctccacatccaccccgggg                                                                                                 >  2:202631‑M2/1‑28 (MQ=255)                                                                                                                                               gCCtacctctaccttacgcgcgaggttggccaacagctccacatccaccccgggggtggccaaggcactgaggtggaagcctgcgctggcggggatggcgctgaaccacggtgccagatcgccgcccaggcgcgccaggatgcgctcgcg  >  1:694647‑M1/1‑3 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CCACGAGGTCTACAGCGCACGCCGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTG  >  NC_002947/4279972‑4280263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.