New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4280116	44 (1.390)	4 (0.130)	4/240	NT	9.2%	coding (1272/1434 nt)	PP_3750	GntR family transcriptional regulator
	?	NC_002947	= 4280140	36 (1.170)					coding (1296/1434 nt)	PP_3750	GntR family transcriptional regulator

CGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTGATCGGTG  >  NC_002947/4279994‑4280284                                                                                                                                                   |                                                                                                                                                 cgcgAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAggc                                                                                                                                               >  1:694647‑M2/1‑147 (MQ=255)      gcgcATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTa                                                                                                                                          <  1:533517/150‑1 (MQ=255)          aTCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCa                                                                                                                                      >  2:257760/1‑150 (MQ=255)             cTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCAc                                                                                                                                     <  1:448202/148‑1 (MQ=255)             cTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCAc                                                                                                                                     >  2:448202/1‑148 (MQ=255)                gcgcgcCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCa                                                                                                                                <  1:679554/150‑1 (MQ=255)                gcgcgcCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCa                                                                                                                                <  2:726916/150‑1 (MQ=255)                                   tGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGCTGTGGAGCTTTGGGCCAACCTCGCGCGTAAGGTAGAGGTACGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCAc                                                                                                             >  1:103833/1‑150 (MQ=255)                                   tGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCAc                                                                                                             <  2:694825/150‑1 (MQ=255)                                                     ccATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGt                                                                                                                                           <  1:376974/102‑1 (MQ=255)                                                     ccATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGt                                                                                                                                           >  2:376974/1‑102 (MQ=255)                                                     ccATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTAt                                                                                           <  1:171135/150‑1 (MQ=255)                                                       aTCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTgg                                                                                                                                  <  2:698235/109‑1 (MQ=255)                                                       aTCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTgg                                                                                                                                  >  1:698235/1‑109 (MQ=255)                                                        tCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCAccc                                                                                                                             >  1:374886/1‑113 (MQ=255)                                                        tCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCAccc                                                                                                                             <  2:374886/113‑1 (MQ=255)                                                        tCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGa                                                                                        <  1:257760/150‑1 (MQ=255)                                                          cccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTGACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATg                                                                                      >  1:825141/1‑150 (MQ=255)                                                           ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATgg                                                                                     <  1:299056/150‑1 (MQ=255)                                                           ccGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATgg                                                                                     >  1:169227/1‑150 (MQ=255)                                                                         ttCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTACGCCTGCCGTCCCGGGGACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                                       >  1:619092/1‑150 (MQ=255)                                                                         ttCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCAAACCCCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                                       >  1:321013/1‑150 (MQ=255)                                                                           ccACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTg                                                                                                                                   <  1:103524/88‑1 (MQ=255)                                                                           ccACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTg                                                                                                                                   >  2:103524/1‑88 (MQ=255)                                                                                        ttGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATc                                                        <  1:602864/150‑1 (MQ=255)                                                                                          ggCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCtt                                                                                 >  2:85807/1‑123 (MQ=255)                                                                                          ggCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCtt                                                                                 <  1:85807/123‑1 (MQ=255)                                                                                          atccACCCCGGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGa                                                      >  2:27332/3‑150 (MQ=255)                                                                                                       gTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAATGTAGAGGTAggccaacagctccacatccaccccgggggtggccaaggcactgaggtggaa                                                                                               >  1:19219‑M2/1‑45 (MQ=255)                                                                                                       gTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAggccaacagctccacatccaccccgggggtggccaaggcactgaggtggaa                                                                                               <  2:19219‑M2/96‑52 (MQ=255)                                                                                                          gATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCgg                                      <  2:786579/150‑1 (MQ=255)                                                                                                            tgtgGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                                       <  2:176045/115‑1 (MQ=255)                                                                                                            tgtgGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATc                                                                       >  1:176045/1‑115 (MQ=255)                                                                                                                 aGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGgc                                                                             <  1:717830/104‑1 (MQ=255)                                                                                                                 aGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGgc                                                                             >  2:717830/1‑104 (MQ=255)                                                                                                                        ggCCAACCTCGCGCGTAAGGTAGAGGTAgaccaacagctccacatccaccccgggg                                                                                                                      >  2:202631‑M2/1‑28 (MQ=255)                                                                                                                        ggCCAACCTCGCGCGTAAGGTAGAGGTAgaccaacagctccacatccaccccgggg                                                                                                                      <  1:202631‑M2/56‑29 (MQ=255)                                                                                                                                 cgcgcgTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCtggg                                                                                               <  1:421780/70‑1 (MQ=255)                                                                                                                                 cgcgcgTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCtggg                                                                                               >  2:421780/1‑70 (MQ=255)                                                                                                                                       tAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATAccc                         >  1:47990/1‑134 (MQ=255)                                                                                                                                       tAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATAccc                         <  2:47990/134‑1 (MQ=255)                                                                                                                                           gtagaggtagGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTGAt       <  2:371981/148‑1 (MQ=255)                                                                                                                                           gtagaggtagGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTGAt       >  1:371981/1‑148 (MQ=255)                                                                                                                                              gaggtagGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCGGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTGATCGGTg  <  2:619092/150‑1 (MQ=255)                                                                                                                                                   aggccaacagctccacatccaccccgggggtggccaaggcactgaggtggaagcctgcgctggcggggatggcgctgaaccacggtgccagatcgccgcccaggcgcgccaggatgcgctcgcggcgtgcgctgtaga         <  1:114986‑M2/138‑138 (MQ=255)                                                                                                                                                   aggccaacagctccacatccaccccgggggtggccaaggcactgaggtggaagcctgcgctggcggggatggcgctgaaccacggtgccagatcgccgcccaggcgcgccaggatgcgctcgcggcgtgcgctgtaga         >  2:114986‑M2/1‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CGCGAGCGCATCCTGGCGCGCCTGGGCGGCGATCTGGCACCGTGGTTCAGCGCCATCCCCGCCAGCGCAGGCTTCCACCTCAGTGCCTTGGCCACCCCCGGGGTGGATGTGGAGCTGTTGGCCAACCTCGCGCGTAAGGTAGAGGTAGGCCTGTATTCACTGGCACCCTTCTTCAGCGAGGCACCGGTACGGCCGGGGCTATTGATGGGCTTCGGCGCCATCGAACTGCTGGATATCGACCCGGCGCTGGACCGGGTACGCGATACCCTGCAACGCCTCAGTTGATCGGTG  >  NC_002947/4279994‑4280284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.