New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4668405 =	28 (0.880)	3 (0.100)	3/232	NT	9.5%	coding (231/1533 nt)	nuoM	NADH‑quinone oxidoreductase subunit M
	?	NC_002947	4668448 =	31 (1.050)					coding (274/1533 nt)	nuoM	NADH‑quinone oxidoreductase subunit M

GCGCTGCTTACCATGTCCCTGCTGCTTGGCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGCTTCTTCCACCTCAACCTGATGTGGATCC  >  NC_002947/4668268‑4668547                                                                                                                                          |                                                                                                                                               gcgcTGCTTACCATGTCCCTGCTGCTTGGCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCAc                                                                                                                                    >  1:850402/1‑150 (MQ=255)      gctTACCATGTACCTGCTGCTTGGCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGc                                                                                                                               >  2:43036/1‑150 (MQ=255)         tACCATGTCCCTGCTGCTTGGCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCt                                                                                                                            <  1:570464/150‑1 (MQ=255)             aTGTCCCTGCTGCTTGGCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGAc                                                                                                                        >  1:222043/1‑150 (MQ=255)                   ctgctgCTTGGCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTg                                                                                                                  >  1:526631/1‑150 (MQ=255)                       tgctTGGCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCgc                                                                                                              <  1:2414/150‑1 (MQ=255)                             gCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCtga                                                                                                        <  2:222043/150‑1 (MQ=255)                             cgccgccgaggatccacatcaggttgaggtggaagaagccgacgtggcgctggatctctttccaggaacacagtaccgacagcacaccgagcaggccggtgagcaggatCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCtga                                                                                                        >  1:380645‑M1/110‑150 (MQ=255)                                    ccTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCt                                                                                                 <  2:526631/150‑1 (MQ=255)                                            acatcaggttgaggtggaagaagccgacgtggcgctggatctctttccaggaacacagtaccgacagcacaccgagcaggccggtgagcaggatCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCtgatga                                                                                                     <  2:131273‑M1/44‑1 (MQ=255)                                            acatcaggttgaggtggaagaagccgacgtggcgctggatctctttccaggaacacagtaccgacagcacaccgagcaggccggtgagcaggatCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCtgatga                                                                                                     >  1:131273‑M1/95‑138 (MQ=255)                                                       ggCGACTACACCCTTGCTCCCGCCCCGGGCGCCGACACACCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGgt                                                                              <  1:816914/150‑1 (MQ=255)                                                                acCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCg                                                                     <  2:516523/150‑1 (MQ=255)                                                                        tCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACtgtg                                                             >  1:300722/1‑150 (MQ=255)                                                                           cGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTc                                                          >  1:767679/1‑150 (MQ=255)                                                                                cGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGa                                                     >  1:557667/1‑150 (MQ=255)                                                                                  ggCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGaaa                                                   <  2:557667/150‑1 (MQ=255)                                                                                   gcgcCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGCTCGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAag                                                  >  1:57197/1‑150 (MQ=255)                                                                                       cGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGAt                                              <  2:45742/150‑1 (MQ=255)                                                                                       cGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGAt                                              <  1:208552/150‑1 (MQ=255)                                                                                                    gCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTc                                 <  2:767679/150‑1 (MQ=255)                                                                                                       ctcGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTcaac                              <  2:850402/150‑4 (MQ=255)                                                                                                        tcGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACtgt                                                              <  1:843345/117‑1 (MQ=255)                                                                                                        tcGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACtgt                                                              >  2:843345/1‑117 (MQ=255)                                                                                                          gAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGcttc                           >  1:486752/1‑150 (MQ=255)                                                                                                             tACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGCttcttc                        <  2:300722/150‑1 (MQ=255)                                                                                                                aaaGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGCTTCTTCCAc                     >  1:234028/1‑150 (MQ=255)                                                                                                                        gTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGCTTCTTCCACCTCAACCt             >  1:769580/1‑150 (MQ=255)                                                                                                                             tCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGCTTCTTCCACCTCAACCTGAtgt        <  2:769580/150‑1 (MQ=255)                                                                                                                                aGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGCTTCTTCCACCTCAACCTGATGTGGa     >  1:288475/1‑150 (MQ=255)                                                                                                                                   gTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGCTTCTTCCACCTCAACCTGATGTGGATcc  >  1:624597/1‑150 (MQ=255)                                                                                                                                          |                                                                                                                                               GCGCTGCTTACCATGTCCCTGCTGCTTGGCATCGGCCTGTGGCTGTGGGGTACCGGCGACTACACCCTTGCTCCCGCCCCGGGCGCCGAACCGGCCTGGGCTCTCGAATACAAAGTCGAGTGGATCAAGCGTTTCGGCATCAGCATCCACCTGGCCCTGGACGGCCTGTCGCTGCTGATGATCCTGCTCACCGGCCTGCTCGGTGTGCTGTCGGTACTGTGTTCCTGGAAAGAGATCCAGCGCCACGTCGGCTTCTTCCACCTCAACCTGATGTGGATCC  >  NC_002947/4668268‑4668547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.