New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5207742	19 (0.600)	3 (0.110)	3/222	NT	12.8%	intergenic (+32/+82)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 5207793	24 (0.850)					intergenic (+83/+31)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

GGCGATCGGCAAGCTGGGGGACAAGGCCAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCAC  >  NC_002947/5207593‑5207886                                                                                                                                                      |                                                                                                                                                 ggCGATCGGCAAGCTGGGGGACAAGGCCAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGG                                                                                                                                                  <  2:721151‑M1/150‑1 (MQ=255)  gCGATCGGCAAGCTGGGGGACAAGGCCAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCggg                                                                                                                                                 <  1:134628/150‑1 (MQ=255)   cGATCGGCAAGCTGGGGGACAAGGCCAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGc                                                                                                                                                >  1:577530/1‑150 (MQ=255)             gCTGGGGGACAAGGCCAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTc                                                                                                                                      >  1:61860/1‑150 (MQ=255)                    gACAAGGCCAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACggg                                                                                                                               <  2:836716/150‑1 (MQ=255)                        aGGCCAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGt                                                                                                                           <  1:478288/150‑1 (MQ=255)                                         gCCCTGCAGGCGCGTGAAGTGCCGACCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTa                                                                                                          >  1:117093/1‑150 (MQ=255)                                                  gcgcGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGttt                                                                                                 >  2:146294/1‑150 (MQ=255)                                                  gcgcGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGttt                                                                                                 >  1:693849/1‑150 (MQ=255)                                                          aGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcga                                                                                         >  1:118695‑M2/1‑144 (MQ=255)                                                             gCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTTCGAGTGCTGGCCTCTTCGCGGtaaaaccgctttagcacagggtggtgataccccccgtaggagcgggcttgcccgcgaaga                                                                                      <  1:53822‑M1/150‑61 (MQ=255)                                                                   cccGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCgg                                                                                >  1:78613/1‑150 (MQ=255)                                                                      gcgcAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcgaaga                                                                                      <  2:640432‑M2/141‑10 (MQ=255)                                                                      gcgcAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcgaaga                                                                                      >  1:640432‑M2/1‑132 (MQ=255)                                                                      gcgcAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTAc                                                                             >  2:95367/1‑150 (MQ=255)                                                                               gCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAg                                                                    >  2:6563/1‑150 (MQ=255)                                                                                      gagcTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAg                                                             <  1:95367/150‑1 (MQ=255)                                                                                      gagcTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAg                                                             <  2:660554/150‑1 (MQ=255)                                                                                                ctgAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCggg                                                   <  2:577530/150‑1 (MQ=255)                                                                                                 tgAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGTTGTATCACCAccc                                                                                                                 <  2:423534/87‑1 (MQ=255)                                                                                                 tgAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCAccc                                                                                                                 >  1:423534/1‑87 (MQ=255)                                                                                                  gAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGtaaaaccgctttagcacagggtggtgataccccccgtaggag                                                                                                        <  1:21708‑M1/95‑43 (MQ=255)                                                                                                  gAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGtaaaaccgctttagcacagggtggtgataccccccgtaggag                                                                                                        >  2:21708‑M1/1‑53 (MQ=255)                                                                                                        gATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGc                                                                   <  1:548559/126‑1 (MQ=255)                                                                                                        gATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGc                                                                   >  2:548559/1‑126 (MQ=255)                                                                                                                                  gCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGc                 <  2:693849/150‑1 (MQ=255)                                                                                                                                    aGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCtt               >  2:171300/1‑150 (MQ=255)                                                                                                                                            ccTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCTGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGcc       >  1:195394/1‑150 (MQ=255)                                                                                                                                              tctTCGCGGtaaaaccgctttagcacagggtggtgataccccccgtaggagcgggcttgcccgcgaagaggccagcactgccaacacaaaccttacaggctgaaatcgccttcagcagccagctcgctcagcggcttgcgc              <  2:640432‑M1/141‑133 (MQ=255)                                                                                                                                              tctTCGCGGtaaaaccgctttagcacagggtggtgataccccccgtaggagcgggcttgcccgcgaagaggccagcactgccaacacaaaccttacaggctgaaatcgccttcagcagccagctcgctcagcggcttgcgc              >  1:640432‑M1/1‑9 (MQ=255)                                                                                                                                              tctTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcgaagaggccagcactcgaaacacaaaccttacaggctgaaatcgccttcagcagccagctcgctcagcggcttgcgcgggctcggc     <  1:53822‑M2/150‑91 (MQ=255)                                                                                                                                                 tCGCGGtaaaaccgctttagcacagggtggtgataccccccgtaggagcgggcttgcccgcgaagaggccagcactgccaacacaaaccttacaggctgaaatcgccttcagcagccagctcgctcagcggcttgcgcgggctcggcact  >  1:118695‑M1/1‑6 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GGCGATCGGCAAGCTGGGGGACAAGGCCAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCAC  >  NC_002947/5207593‑5207886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.