| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5207742 | 19 (0.600) | 3 (0.110) | 3/222 | NT | 12.8% | intergenic (+32/+82) | PP_4588/PP_4589 | nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | = 5207793 | 24 (0.850) | intergenic (+83/+31) | PP_4588/PP_4589 | nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
AGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCTGTCGGCGAGGTGGGCGCCGAGCT > NC_002947/5207650‑5207937 | aGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcga > 1:118695‑M2/1‑144 (MQ=255) cccGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCgg > 1:78613/1‑150 (MQ=255) gcgcAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcgaaga < 2:640432‑M2/141‑10 (MQ=255) gcgcAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcgaaga > 1:640432‑M2/1‑132 (MQ=255) gcgcAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTAc > 2:95367/1‑150 (MQ=255) gCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAg > 2:6563/1‑150 (MQ=255) gagcTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAg < 1:95367/150‑1 (MQ=255) gagcTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAg < 2:660554/150‑1 (MQ=255) ctgAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCggg < 2:577530/150‑1 (MQ=255) gATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGc > 2:548559/1‑126 (MQ=255) gATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGc < 1:548559/126‑1 (MQ=255) gCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGc < 2:693849/150‑1 (MQ=255) aGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCtt > 2:171300/1‑150 (MQ=255) ccTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCTGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGcc > 1:195394/1‑150 (MQ=255) tctTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcgaagaggccagcactcgaaacacaaaccttacaggctgaaatcgccttcagcagccagctcgctcagcggcttgcgcgggctcggc < 1:53822‑M2/150‑91 (MQ=255) cTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcgaagaggccagcactgccaacacaaaccttacaggctgaaatcgccttc < 1:21708‑M2/95‑54 (MQ=255) cTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAccgcgaagaggccagcactgccaacacaaaccttacaggctgaaatcgccttc > 2:21708‑M2/1‑42 (MQ=255) cTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGacaaacaa < 1:602998/150‑1 (MQ=255) cTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGa > 1:82337/1‑92 (MQ=255) cTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGa < 2:82337/92‑1 (MQ=255) ggTATCACCACCCTGTGCTAAAGCGTTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCg < 1:146294/150‑1 (MQ=255) gTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGc > 1:284625/1‑150 (MQ=255) accaccCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGAt < 2:341445/56‑1 (MQ=255) accaccCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGAt > 1:341445/1‑56 (MQ=255) accaccCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCTGTCg > 2:519007/1‑150 (MQ=255) ccatgtgCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCTGTCGGCGa < 2:61860/147‑1 (MQ=255) tgtgCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCTGTCGGCGAGGt > 2:160991/1‑150 (MQ=255) tgtgCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCTGTCGGCGAGGt > 2:87747/1‑150 (MQ=255) gCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCt > 2:637251/1‑130 (MQ=255) gCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCt < 1:637251/130‑1 (MQ=255) ggTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCTGTCGGCGAGGTGGGCGCCGAGc > 1:175554/1‑150 (MQ=255) gTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCTGTCGGCGAGGTGGGCGCCGAGCt > 1:235660/1‑150 (MQ=255) | AGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCACCATCGCTGTCGGCGAGGTGGGCGCCGAGCT > NC_002947/5207650‑5207937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |