New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5721033 =	33 (1.040)	3 (0.100)	3/234	NT	8.3%	coding (1502/1944 nt)	PP_5021	methyl‑accepting chemotaxis transducer
	?	NC_002947	5721067 =	35 (1.170)					coding (1536/1944 nt)	PP_5021	methyl‑accepting chemotaxis transducer

TATCGAACAACTGGCCGGGCAGATGGACCATTGCCTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTAC  >  NC_002947/5720887‑5721162                                                                                                                                                   |                                                                                                                                  tATCGAACAACTGGCCGGGCAGATGGACCATTGCCTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCCGCATCGTCGACGTCAACAAGTCGGTGCCCGAACAGACCTTTCTGCTGGCGTGGAACGCAGCGATCGAAGc                                                                                                                                <  2:525054/150‑1 (MQ=255)       acaacTGGCCGGGCAGATGGACCATTGCCTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACg                                                                                                                          >  1:107364/1‑150 (MQ=255)            tGGCCGGGCAGATGGACCATTGCCTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCg                                                                                                                     <  1:359199/150‑1 (MQ=255)                  ggCAGATGAACCATTGCCTGGCGGCCATGCAGACCCTGGGAGGCGAGAGCAAACGCTCGGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAgg                                                                                                               <  2:627254/150‑1 (MQ=255)                                  agcgggtcacttcgtcggtaccgttgtgcaggctgtcgatcagttggccgatctcctcggtcgccgtcgacgtgcgctgggccaggccacgcacctcatcggccaccacggcaAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGc                                                                                               >  2:201406‑M1/114‑150 (MQ=255)                                   cTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGcc                                                                                              >  2:205008/1‑150 (MQ=255)                                          ccATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGtggtgg                                                                                       <  2:539745/150‑1 (MQ=255)                                            atacagcaCCTCGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGcc                                                                                     <  2:569317/147‑1 (MQ=255)                                            aTGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGcc                                                                                     >  1:790898/1‑150 (MQ=255)                                                        gCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGt                                                                         >  2:169847/1‑150 (MQ=255)                                                         cAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGtg                                                                        <  1:518269/150‑1 (MQ=255)                                                                    cAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAg                                                             >  2:280470/1‑150 (MQ=255)                                                                     aaaGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAgc                                                            >  1:439278/1‑150 (MQ=255)                                                                     aaaGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAgc                                                            >  2:541598/1‑150 (MQ=255)                                                                      aaGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGCCCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACTGGCCGGTGAGGGCGTGCGCGTCTTGGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAgcg                                                           >  2:523939/1‑150 (MQ=255)                                                                       aGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAgcgc                                                          >  1:748019/1‑150 (MQ=255)                                                                            gttggccgatctcctcggtcgccgtcgacgtgcgctgggccaggccacgcacctcatcggccaccacggcaAAGc                                                                                                                                >  1:482527‑M1/72‑75 (MQ=255)                                                                            gttggccgatctcctcggtcgccgtcgacgtgcgctgggccaggccacgcacctcatcggccaccacggcaAAGc                                                                                                                                <  2:482527‑M1/4‑1 (MQ=255)                                                                                 gcaTTCTCGATGTGATCAAGTCGGTGTACCAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACgg                                                <  1:217079/150‑1 (MQ=255)                                                                                     tctcGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGt                                                      >  1:98778/1‑140 (MQ=255)                                                                                     tctcGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGt                                                      <  2:98778/140‑1 (MQ=255)                                                                                        cGATATAATAAAGTGGGTGTGCGAGCAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCCGCGCACGTCGACGGCGACCgc                                         >  2:189159/1‑149 (MQ=37)                                                                                         gATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCgag                                        <  1:169847/150‑1 (MQ=255)                                                                                         gATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCgag                                        <  2:748019/150‑1 (MQ=255)                                                                                         ctcggtcgccgtcgacgtgcgctgggccaggccacgcacctcatcggccaccacggcaAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCt                                                                                                   >  1:837161‑M1/59‑91 (MQ=255)                                                                                         ctcggtcgccgtcgacgtgcgctgggccaggccacgcacctcatcggccaccacggcaAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCt                                                                                                   <  2:837161‑M1/33‑1 (MQ=255)                                                                                          aTGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCgagg                                       <  1:259557/150‑1 (MQ=255)                                                                                          aTGTGATCAAGCCGGTGTCCGAACAGCCCAATCTGCTGGCGTTGAACGAAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCCGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCATGGACCAGCGCACGTCGACGGGGACAgagg                                       >  2:56158/1‑150 (MQ=38)                                                                                                         tgtCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGa                        <  2:845026/150‑1 (MQ=255)                                                                                                             cGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGa                    >  2:149846/1‑150 (MQ=255)                                                                                                              gAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCAc                                                        >  1:845263/1‑113 (MQ=255)                                                                                                              gAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCAc                                                        <  2:845263/113‑1 (MQ=255)                                                                                                              gAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGAc                   >  1:95942/1‑150 (MQ=255)                                                                                                                    aCCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCTCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTg             <  1:438561/150‑1 (MQ=255)                                                                                                                    aCCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTg             >  1:310425/1‑150 (MQ=255)                                                                                                                      cAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGca           <  2:499574/150‑1 (MQ=255)                                                                                                                               ggCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGATGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTAc  <  2:310425/150‑1 (MQ=255)                                                                                                                                     gAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGAt                       <  2:26272/123‑1 (MQ=255)                                                                                                                                     gAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGAt                       >  1:26272/1‑123 (MQ=255)                                                                                                                                                  gAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAAc       <  1:338912/126‑1 (MQ=255)                                                                                                                                                  gAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAAc       >  2:338912/1‑126 (MQ=255)                                                                                                                                                   |                                                                                                                                  TATCGAACAACTGGCCGGGCAGATGGACCATTGCCTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTAC  >  NC_002947/5720887‑5721162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.