New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5721033 =	33 (1.040)	3 (0.100)	3/234	NT	8.3%	coding (1502/1944 nt)	PP_5021	methyl‑accepting chemotaxis transducer
	?	NC_002947	5721067 =	35 (1.170)					coding (1536/1944 nt)	PP_5021	methyl‑accepting chemotaxis transducer

CCTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGAAGTGACCCGCTTGCTGGACAGCAGCAAGAGCCTGACCGAACAAAGCGT  >  NC_002947/5720920‑5721216                                                                                                                                                    |                                                                                                                                                      agcgggtcacttcgtcggtaccgttgtgcaggctgtcgatcagttggccgatctcctcggtcgccgtcgacgtgcgctgggccaggccacgcacctcatcggccaccacggcaAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGc                                                                                                                                                     >  2:201406‑M1/114‑150 (MQ=255)  cTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGcc                                                                                                                                                    >  2:205008/1‑150 (MQ=255)         ccATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGtggtgg                                                                                                                                             <  2:539745/150‑1 (MQ=255)           atacagcaCCTCGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGcc                                                                                                                                           <  2:569317/147‑1 (MQ=255)           aTGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGcc                                                                                                                                           >  1:790898/1‑150 (MQ=255)                       gCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGt                                                                                                                               >  2:169847/1‑150 (MQ=255)                        cAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGtg                                                                                                                              <  1:518269/150‑1 (MQ=255)                                   cAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAg                                                                                                                   >  2:280470/1‑150 (MQ=255)                                    aaaGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAgc                                                                                                                  >  2:541598/1‑150 (MQ=255)                                    aaaGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAgc                                                                                                                  >  1:439278/1‑150 (MQ=255)                                     aaGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGCCCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACTGGCCGGTGAGGGCGTGCGCGTCTTGGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAgcg                                                                                                                 >  2:523939/1‑150 (MQ=255)                                      aGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAgcgc                                                                                                                >  1:748019/1‑150 (MQ=255)                                                gcaTTCTCGATGTGATCAAGTCGGTGTACCAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACgg                                                                                                      <  1:217079/150‑1 (MQ=255)                                                    tctcGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGt                                                                                                            <  2:98778/140‑1 (MQ=255)                                                    tctcGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGt                                                                                                            >  1:98778/1‑140 (MQ=255)                                                       cGATATAATAAAGTGGGTGTGCGAGCAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCCGCGCACGTCGACGGCGACCgc                                                                                               >  2:189159/1‑149 (MQ=37)                                                        gATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCgag                                                                                              <  1:169847/150‑1 (MQ=255)                                                        gATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCgag                                                                                              <  2:748019/150‑1 (MQ=255)                                                         aTGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCgagg                                                                                             <  1:259557/150‑1 (MQ=255)                                                         aTGTGATCAAGCCGGTGTCCGAACAGCCCAATCTGCTGGCGTTGAACGAAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCCGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCATGGACCAGCGCACGTCGACGGGGACAgagg                                                                                             >  2:56158/1‑150 (MQ=38)                                                                        tgtCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGa                                                                              <  2:845026/150‑1 (MQ=255)                                                                            cGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGa                                                                          >  2:149846/1‑150 (MQ=255)                                                                             gAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCAc                                                                                                              <  2:845263/113‑1 (MQ=255)                                                                             gAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCAc                                                                                                              >  1:845263/1‑113 (MQ=255)                                                                             gAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGAc                                                                         >  1:95942/1‑150 (MQ=255)                                                                                   aCCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCTCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTg                                                                   <  1:438561/150‑1 (MQ=255)                                                                                   aCCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTg                                                                   >  1:310425/1‑150 (MQ=255)                                                                                     cAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGca                                                                 <  2:499574/150‑1 (MQ=255)                                                                                              ggCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGATGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTAc                                                        <  2:310425/150‑1 (MQ=255)                                                                                                    gAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGAt                                                                             <  2:26272/123‑1 (MQ=255)                                                                                                    gAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGAt                                                                             >  1:26272/1‑123 (MQ=255)                                                                                                               gcaaagccgcgcccggcctcaccggcccgtgcggcttTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGAAGTGACCCGCt                                       >  2:201406‑M2/38‑150 (MQ=255)                                                                                                                 gAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAAc                                                             <  1:338912/126‑1 (MQ=255)                                                                                                                 gAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAAc                                                             >  2:338912/1‑126 (MQ=255)                                                                                                                   agccgcgcccggcctcaccggcccgtgcggcttTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCgag                                                                                              <  2:837161‑M2/58‑1 (MQ=255)                                                                                                                   agccgcgcccggcctcaccggcccgtgcggcttTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCgag                                                                                              >  1:837161‑M2/34‑91 (MQ=255)                                                                                                                   AGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGAAGTGACCCGCTTGCt                                   >  2:95942‑M1/1‑150 (MQ=255)                                                                                                                           gggCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGAAGTGACCCGCTTGCTGGAcagca                           <  1:56158/150‑1 (MQ=255)                                                                                                                                    aGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGCAGCGAGGCCTGGTTCTGCGCTTTTCGACGGCGACCGATGAGATAGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGAAGTGACCCGCTTGCTGGACAGCAGCAAGAGcc                  >  1:445342/1‑150 (MQ=255)                                                                                                                                      gCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGaa                                                 <  2:182291/117‑1 (MQ=255)                                                                                                                                      gCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGaa                                                 >  1:182291/1‑117 (MQ=255)                                                                                                                                        cGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGAAGTGACCCGCTTGCTGGACAGCAGCAAGAGCCTGAc              >  1:6472/1‑150 (MQ=255)                                                                                                                                                gcttTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAAc                                                                                 <  2:482527‑M2/71‑1 (MQ=255)                                                                                                                                                gcttTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAAc                                                                                 >  1:482527‑M2/5‑75 (MQ=255)                                                                                                                                                    tGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGAAGTGACCCGCTTGCTGGACAGCAGCAAGAGCCTGACCGAACAAAGCGt  <  1:541598/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCTGGCGGCCATGCAGCACCTGGCAGGCGAGAGCCAAAGGATTGGCAGCATTCTCGATGTGATCAAGTCGGTGTCCGAACAGACCAATCTGCTGGCGTTGAACGCAGCGATCGAAGCCGCACGGGCCGGTGAGGCCGGGCGCGGCTTTGCCGTGGTGGCCGATGAGGTGCGTGGCCTGGCCCAGCGCACGTCGACGGCGACCGAGGAGATCGGCCAACTGATCGACAGCCTGCACAACGGTACCGACGAAGTGACCCGCTTGCTGGACAGCAGCAAGAGCCTGACCGAACAAAGCGT  >  NC_002947/5720920‑5721216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.