New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5816823	15 (0.470)	4 (0.130)	4/236	NT	20.9%	coding (577/624 nt)	PP_5092	NLP/P60 protein
	?	NC_002947	= 5816856	16 (0.530)					coding (610/624 nt)	PP_5092	NLP/P60 protein

TCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCG  >  NC_002947/5816680‑5816972                                                                                                                                                |                                                                                                                                                      tcttcAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACGGCTTCAGCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCggg                                                                                                                                                 <  2:296126/150‑1 (MQ=255)         aTCAAGAGCCGTCGGGACAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATTGACACCGTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCg                                                                                                                                         >  1:317048/1‑150 (MQ=255)                             tCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCt                                                                                                                     <  2:851253‑M2/150‑2 (MQ=255)                               aCGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAgactcagctgctgctctttcggcagcacccgcttgg                                                                                                                   >  2:625718‑M1/1‑114 (MQ=255)                                   aGCCATCTACCTGGGTAACGACCGCTTCATCCTCGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAgactcagctgctgctctttcggcagcacccgcttggccac                                                                                                               <  1:625718‑M1/150‑41 (MQ=255)                                           aCCTGGGTAACGACCGCTTCATCCACTCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCg                                                                                                                                                   <  1:232392/106‑1 (MQ=255)                                           aCCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCg                                                                                                                                                   >  2:232392/1‑106 (MQ=255)                                                    aCGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGgc                                                                                              >  2:590394/1‑150 (MQ=255)                                                    aCGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCCgc                                                                                              <  1:851253/150‑1 (MQ=255)                                                         cGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGGAAGAGCAGCAGCTGAGGCTGGCCAAGCGTTAAGCTTATCGGCGCTAt                                                                                         >  1:180938/1‑150 (MQ=255)                                                            ttCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGAAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCg                                                                                      <  1:590394/150‑1 (MQ=255)                                                                          acgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTc                                                                        >  2:827665/1‑150 (MQ=255)                                                                             ccGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTcgcg                                                                     <  1:108351/150‑1 (MQ=255)                                                                                    aaGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGC                                                              >  1:107297‑M1/1‑150 (MQ=255)                                                                                    aaGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGC                                                              >  1:321862‑M1/1‑150 (MQ=255)                                                                                     aGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCC                                                             >  1:318263‑M1/1‑150 (MQ=255)                                                                                                aTCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAgactcagctgctgctctttcggcagcacccgcttgg                                                                                                                   >  1:732506‑M1/1‑49 (MQ=255)                                                                                                aTCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAgactcagctgctgctctttcggcagcacccgcttgg                                                                                                                   <  2:732506‑M1/85‑37 (MQ=255)                                                                                                 tCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtg                                                                                                                    >  1:808862‑M2/1‑81 (MQ=255)                                                                                                 tCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtg                                                                                                                    <  2:808862‑M2/83‑3 (MQ=255)                                                                                                 tCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGc                                                                              >  1:14744/1‑121 (MQ=255)                                                                                                 tCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGc                                                                              <  2:14744/121‑1 (MQ=255)                                                                                                         ttGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCCCGCCCGCTCCCACAGTTAgcgctt                                         >  2:725105/1‑148 (MQ=255)                                                                                                             gCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCGCTTCGCGGGCACGACCGCTCCCACAGGTAGCGCGTCGct                                     >  2:653968/1‑150 (MQ=255)                                                                                                                  ccTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgc                                <  2:321862/150‑1 (MQ=255)                                                                                                                    ttACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgcgc                              >  1:778640/1‑150 (MQ=255)                                                                                                                           cAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTc                       <  2:778640/150‑1 (MQ=255)                                                                                                                                gCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAta                  <  2:697583‑M2/150‑3 (MQ=255)                                                                                                                                    tACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGATGAGTCTGGCCAAGCGTTCAGCTGATCTGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGGGTCGCTCTCTCACGCAGCTCACAtacctg              <  2:50047‑M2/150‑7 (MQ=255)                                                                                                                                          gtggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgaggatgaagcggtcgttacccaggtagatggct        <  1:625718‑M2/150‑111 (MQ=255)                                                                                                                                              ccAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgtggatgaagcggtcgttacccaggtagatggctacgt    >  2:625718‑M2/1‑36 (MQ=255)                                                                                                                                              ccAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgat                                                                     <  2:732506‑M2/85‑50 (MQ=255)                                                                                                                                              ccAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgat                                                                     >  1:732506‑M2/1‑36 (MQ=255)                                                                                                                                               cAgactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcga                                                                      <  2:808862‑M1/83‑82 (MQ=255)                                                                                                                                               cAgactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcga                                                                      >  1:808862‑M1/1‑2 (MQ=255)                                                                                                                                               cAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggc   <  1:652246‑M2/150‑18 (MQ=255)                                                                                                                                                agactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgtggatgaagcggtcgttacccaggtagatggctacgtga  <  2:851253‑M1/150‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                      TCTTCAACATCAAGAGCCGTCGGGTCAATCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCG  >  NC_002947/5816680‑5816972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.