New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5816823	15 (0.470)	4 (0.130)	4/236	NT	20.9%	coding (577/624 nt)	PP_5092	NLP/P60 protein
	?	NC_002947	= 5816856	16 (0.530)					coding (610/624 nt)	PP_5092	NLP/P60 protein

TCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTA  >  NC_002947/5816708‑5817001                                                                                                                                                     |                                                                                                                                                  tCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCt                                                                                                                                                  <  2:851253‑M2/150‑2 (MQ=255)                        aCGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGgc                                                                                                                           >  2:590394/1‑150 (MQ=255)                        aCGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCCgc                                                                                                                           <  1:851253/150‑1 (MQ=255)                             cGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGGAAGAGCAGCAGCTGAGGCTGGCCAAGCGTTAAGCTTATCGGCGCTAt                                                                                                                      >  1:180938/1‑150 (MQ=255)                                ttCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGAAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCg                                                                                                                   <  1:590394/150‑1 (MQ=255)                                              acgcCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTc                                                                                                     >  2:827665/1‑150 (MQ=255)                                                 ccGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTcgcg                                                                                                  <  1:108351/150‑1 (MQ=255)                                                        aaGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGC                                                                                           >  1:107297‑M1/1‑150 (MQ=255)                                                        aaGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGC                                                                                           >  1:321862‑M1/1‑150 (MQ=255)                                                         aGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCC                                                                                          >  1:318263‑M1/1‑150 (MQ=255)                                                                     tCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtg                                                                                                                                                 <  2:808862‑M2/83‑3 (MQ=255)                                                                     tCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtg                                                                                                                                                 >  1:808862‑M2/1‑81 (MQ=255)                                                                     tCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGc                                                                                                           >  1:14744/1‑121 (MQ=255)                                                                     tCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGc                                                                                                           <  2:14744/121‑1 (MQ=255)                                                                             ttGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCCCGCCCGCTCCCACAGTTAgcgctt                                                                      >  2:725105/1‑148 (MQ=255)                                                                                 gCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCGCTTCGCGGGCACGACCGCTCCCACAGGTAGCGCGTCGct                                                                  >  2:653968/1‑150 (MQ=255)                                                                                      ccTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgc                                                             <  2:321862/150‑1 (MQ=255)                                                                                        ttACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgcgc                                                           >  1:778640/1‑150 (MQ=255)                                                                                               cAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTc                                                    <  2:778640/150‑1 (MQ=255)                                                                                                    gCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAta                                               <  2:697583‑M2/150‑3 (MQ=255)                                                                                                        tACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGATGAGTCTGGCCAAGCGTTCAGCTGATCTGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGGGTCGCTCTCTCACGCAGCTCACAtacctg                                           <  2:50047‑M2/150‑7 (MQ=255)                                                                                                              gtggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgaggatgaagcggtcgttacccaggtagatggct                                     <  1:625718‑M2/150‑111 (MQ=255)                                                                                                                  ccAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactcacccgcttgccacggcgtggagcgtggatgaagcggtcgttacccaggtagatggctacgt                                 >  2:625718‑M2/1‑36 (MQ=255)                                                                                                                  ccAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgat                                                                                                  >  1:732506‑M2/1‑36 (MQ=255)                                                                                                                  ccAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCtggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgat                                                                                                  <  2:732506‑M2/85‑50 (MQ=255)                                                                                                                   cAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggc                                <  1:652246‑M2/150‑18 (MQ=255)                                                                                                                           tgctgcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgg                                        >  1:112005‑M2/1‑125 (MQ=255)                                                                                                                           tgctgcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgg                                        <  2:112005‑M2/134‑10 (MQ=255)                                                                                                                              tgcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgg                                        <  1:545594‑M2/131‑10 (MQ=255)                                                                                                                              tgcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgg                                        >  2:545594‑M2/1‑122 (MQ=255)                                                                                                                                  gAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATGGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgt                                          <  1:812891‑M2/125‑8 (MQ=255)                                                                                                                                  gAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgt                                          >  2:812891‑M2/1‑118 (MQ=255)                                                                                                                                   aaaGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAtgtgagctgcgcgcgagagcgacgcgctacctgtggga                                      >  1:328630‑M1/1‑90 (MQ=255)                                                                                                                                   aaaGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAtgtgagctgcgcgcgagagcgacgcgctacctgtggga                                      <  2:328630‑M1/128‑39 (MQ=255)                                                                                                                                       agcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCttt            <  2:107297/150‑1 (MQ=255)                                                                                                                                                tGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAgg       >  2:756805/1‑146 (MQ=255)                                                                                                                                                tGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAgg       <  1:756805/146‑1 (MQ=255)                                                                                                                                                 gAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGtacta  >  2:774382/1‑150 (MQ=255)                                                                                                                                                  aGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGC                                                                                           <  2:282711‑M1/60‑1 (MQ=255)                                                                                                                                                  aGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGC                                                                                           >  1:282711‑M1/1‑60 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TCACGTAGCCATCTACCTGGGTAACGACCGCTTCATCCACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTA  >  NC_002947/5816708‑5817001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.