New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	147818 =	33 (1.040)	3 (0.100)	3/236	NT	9.6%	coding (272/636 nt)	PP_0139	lipoprotein
	?	NC_002947	147865 =	25 (0.830)					coding (225/636 nt)	PP_0139	lipoprotein

CGGCCAGTTCGTAGTCTGCCTGCAGGTTACTGTCGTCAGCGCTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCGGCTGGGCTGGTTCACCGGCAGGCGATAATGATCCAC  >  NC_002947/147723‑148005                                                                                                                                               |                                                                                                                                             cGGCCAGTTCGTAGTCTGCCTGCAGGTTACTGTCGTCAGCGCTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACAt                                                                                                                                       >  1:285485/1‑150 (MQ=255)        ttCGTAGTCTGCCTGCAGGTTACTGTCGTTCGCGCTCAGGTGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTg                                                                                                                                <  2:285485/150‑1 (MQ=255)         tCGTAGTCTGCCTGCAGGTTACTGTCGTCAGCGCTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTgg                                                                                                                               <  2:555111/150‑1 (MQ=255)              gTCTGCCTGCAGGTTACTGTCGTCAGCGCTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAAc                                                                                                                          >  2:395781/1‑150 (MQ=255)                   cctgcAGGTTACTGTCGTCAGCGCTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACgg                                                                                                                     >  1:389491/1‑150 (MQ=255)                      gcAGGTTACTGTCGTCAGCGCTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCaa                                                                                                                  <  1:395781/150‑1 (MQ=255)                        aGGTTACTGTCGTCAGCGCTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATc                                                                                                                <  2:387482/150‑1 (MQ=255)                                       gcgcTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCGGGCCaag                                                                                                 <  1:146730/150‑2 (MQ=255)                                               gcgcTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACt                                                                                         >  1:375341/1‑150 (MQ=255)                                                 gcTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCCGCCAACACTTCACTgg                                                                                       >  2:305940/1‑150 (MQ=255)                                                         tGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGAGACCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGc                                                                               >  1:700937/1‑150 (MQ=255)                                                              cTCACGCTGGAACCCGTCGAGCAAGTGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGtt                                                                          <  2:511226/150‑1 (MQ=255)                                                               tCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTggg                                                                                                                              >  1:665252/1‑97 (MQ=255)                                                               tCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTggg                                                                                                                              <  2:665252/97‑1 (MQ=255)                                                                   gCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACGGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATGCTTGGCGCAGCCAACACTTCACTCGCCAGCAGCGTGTTAAggg                                                                     >  2:396888/1‑149 (MQ=255)                                                                     tGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGgcgc                                                                   >  1:706047/1‑150 (MQ=255)                                                                                       cGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAgcggc                                                 <  1:182947/150‑1 (MQ=255)                                                                                        ggTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAgcggcg                                                >  2:172724/1‑150 (MQ=255)                                                                                              gcagcagcaCCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCtg                                          >  1:115321/1‑150 (MQ=255)                                                                                                AGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCtgtg                                        <  1:403781‑M1/150‑1 (MQ=255)                                                                                                 gcagctacaagggcgcgcgctggagcgatgcggccccggtgctgctCACCACATTGCCCTGGGGAACCAc                                                                                                                       >  1:422492‑M2/47‑70 (MQ=255)                                                                                                 gcagctacaagggcgcgcgctggagcgatgcggccccggtgctgctCACCACATTGCCCTGGGGAACCAc                                                                                                                       <  2:422492‑M2/24‑1 (MQ=255)                                                                                                 GCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGc                                       >  2:403781‑M1/1‑150 (MQ=255)                                                                                                 GCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGc                                       >  2:389491‑M1/1‑150 (MQ=255)                                                                                                  CAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCg                                      >  2:90989‑M1/1‑150 (MQ=255)                                                                                                   agctacaagggcgcgcgctggagcgatgcggccccggtgctgctCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCgg                                     >  1:820708‑M2/45‑150 (MQ=255)                                                                                                   AGCTCCCGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGTTCATCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCgg                                     >  1:396888‑M1/1‑150 (MQ=255)                                                                                                     CACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCGGCt                                   <  1:371139‑M1/150‑1 (MQ=255)                                                                                                      aCCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCggctg                                  >  1:439246/1‑150 (MQ=255)                                                                                                          gggCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCggctgggct                              <  1:172724/150‑1 (MQ=255)                                                                                                             ccGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCGGCTGGGCTGGt                           >  1:219538/1‑150 (MQ=255)                                                                                                                        cAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCGGCTGGGCTGGTTCACCGGCAgg                >  2:743290/1‑150 (MQ=255)                                                                                                                             cgcgcCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCGGCTGGGCTGGTTCACCGGCAGGCGATa           <  1:743290/150‑1 (MQ=255)                                                                                                                                  ccTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCGGCTGGGCCGGTTCACCGGCAGGCGATAATGAt      >  2:477334/1‑150 (MQ=255)                                                                                                                                      gTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCGGCTGGGCTGGTTCACCGGCAGGCGATAATGATCcac  <  2:375341/150‑1 (MQ=255)                                                                                                                                        aGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAgg                                                                      >  2:139559/1‑80 (MQ=255)                                                                                                                                        aGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAgg                                                                      <  1:139559/80‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             CGGCCAGTTCGTAGTCTGCCTGCAGGTTACTGTCGTCAGCGCTCAGGCGCTGTACCTGGCCCTCACGCTGGAACCCGTCGAGCAAGCGGTTACGCAGCAGCACCGGGGCCGCATCGCTCCAGCGCGCGCCCTTGTAGCTGCTCACCACATTGCCCTGGGGAACCACGGCAATCCTTGGCCCGGCCAACACTTCACTGGCCAGCGGCTTGTTCAGGCGCAATGACCAGTCCAGCGGCGGCGCTGTGCGGCTGGGCTGGTTCACCGGCAGGCGATAATGATCCAC  >  NC_002947/147723‑148005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.